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shandley
/
hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
MIT License
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Long reads support
#113
owenkuo-TW
opened
1 week ago
5
ERROR: Snakemake failed
#112
baidefeng
opened
2 weeks ago
4
Adding an ID blacklist file
#111
linsalrob
opened
3 weeks ago
1
Hecatomb not working ( secondary aa taxonomy)
#110
RarltyOne
opened
1 month ago
3
bugfixes
#109
beardymcjohnface
opened
3 months ago
0
hecatomb.config.yaml
#108
wuhuiyun07
closed
3 months ago
1
hecatomb combine not working
#107
gregorykrice
opened
3 months ago
3
Placeholder of length limit
#106
KailunZM
opened
3 months ago
3
Dev
#105
beardymcjohnface
closed
4 months ago
0
Errors in newest version 1.3.0
#104
pengouy
opened
4 months ago
15
Dev
#103
beardymcjohnface
closed
4 months ago
0
unit test updates
#102
beardymcjohnface
closed
5 months ago
0
ModuleNotFoundError: No module named 'attrmap'
#101
Eddylusamaki
closed
5 months ago
1
98, 99% Failure Issue
#100
Key-man-fromArchive
opened
6 months ago
1
out-of-memory error during population_assembly.flye, STAGE: repeat
#99
mihinduk
closed
5 months ago
2
add-host is failing on mask_host
#98
beardymcjohnface
opened
9 months ago
3
No rule to produce assembly
#97
mhmism
opened
10 months ago
5
Filtering out host (human) genome beforehand?
#96
mhmism
opened
11 months ago
3
bigtable.tsv column question
#95
mihinduk
closed
8 months ago
1
Dev
#94
beardymcjohnface
closed
7 months ago
0
Update dev
#93
beardymcjohnface
closed
1 year ago
0
Dev
#92
beardymcjohnface
closed
1 year ago
0
Can Hecatomb be used for searching not only viruses but also bacteria, fungi, and mycoplasma?
#91
Key-man-fromArchive
opened
1 year ago
1
Solving OSerror Issues in a WSL Environment during the megahit step.
#90
Key-man-fromArchive
opened
1 year ago
2
Dev
#89
beardymcjohnface
closed
1 year ago
0
Skip host removal
#88
beardymcjohnface
closed
8 months ago
1
HPC Execution problem when changing to V.1.1.0
#87
luisalbertoc95
closed
1 year ago
4
HPC database installation problems
#86
lucyintheskyzzz
closed
3 months ago
31
I want to create a web app for hecatomb.
#85
Key-man-fromArchive
opened
1 year ago
1
Enhancement: add whitelist to pre-processing
#84
dhoconno
opened
1 year ago
2
assembly Contigs in results folder
#83
linsalrob
closed
1 year ago
1
readthedocs viral ecology R tutorial error fix
#82
RyCrobe
closed
1 year ago
1
Dev
#81
beardymcjohnface
closed
1 year ago
0
Check for the presence of an environment variable for location of databases
#80
linsalrob
closed
1 year ago
1
Illumina_NextSeq_Run dies immediately
#79
mihinduk
opened
2 years ago
2
flye crash in population_assembly step
#78
alanorth
opened
2 years ago
2
mmseqs: command not found
#77
alanorth
closed
1 year ago
7
fastp not building
#76
beardymcjohnface
closed
1 year ago
8
Missing new line in contigAnnotations.tsv
#75
mihinduk
closed
1 year ago
1
crash unknown
#74
Vikash84
closed
2 years ago
1
bring new updates into dev
#73
beardymcjohnface
closed
2 years ago
0
Merge pull request #70 from SarahBeecroft/main
#72
beardymcjohnface
closed
2 years ago
0
Add in round A/B seq functionality
#71
SarahBeecroft
closed
2 years ago
0
Adding single end and fastp functions
#70
SarahBeecroft
closed
2 years ago
0
Error in rule SECONDARY_AA_refactor_finalize
#69
Leran10
closed
1 year ago
1
missing fields in outfile
#68
mihinduk
closed
2 years ago
5
taxonomy improvement
#67
mihinduk
opened
2 years ago
4
Enhancement: Host
#66
mihinduk
opened
2 years ago
5
MANY missing output files; Input files updated by another job
#65
mihinduk
closed
2 years ago
1
Database installation problems
#64
agudeloromero
closed
2 years ago
4
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