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shandley
/
hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
MIT License
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missing fields in outfile
#68
mihinduk
closed
2 years ago
5
taxonomy improvement
#67
mihinduk
opened
2 years ago
4
Enhancement: Host
#66
mihinduk
opened
2 years ago
5
MANY missing output files; Input files updated by another job
#65
mihinduk
closed
2 years ago
1
Database installation problems
#64
agudeloromero
closed
2 years ago
4
Mmseqs update
#63
beardymcjohnface
closed
2 years ago
0
Dev
#62
beardymcjohnface
closed
2 years ago
0
Error in secondary_nt_lca_table step
#61
Leran10
closed
2 years ago
11
Error executing PRIMARY_NT_reformat
#60
shandley
closed
2 years ago
1
Java Runtime Error when running test databases on VM
#59
dajsfiles
closed
2 years ago
43
Documentation
#58
mihinduk
closed
2 years ago
2
Partition phage and eukaryotic viruses
#57
shandley
opened
2 years ago
1
snakemake profiles
#56
linsalrob
closed
2 years ago
2
Error: EOF marker is absent.There appear to be different numbers of reads in the paired input files
#55
Leran10
closed
2 years ago
5
Dev
#54
henr0089
closed
2 years ago
0
Updates to config file; hecatomb will now always dump the config file…
#53
beardymcjohnface
closed
2 years ago
0
hecatomb install giving error
#52
Vikash84
closed
2 years ago
5
Dev
#51
beardymcjohnface
closed
2 years ago
0
new version number
#50
beardymcjohnface
closed
2 years ago
0
Dev
#49
beardymcjohnface
closed
2 years ago
0
Example Profile Broken
#48
gbouras13
closed
2 years ago
2
Run Offline
#47
gbouras13
closed
2 years ago
2
Problem with running
#46
wertick01
closed
2 years ago
11
does --configfile work with the download script?
#45
beardymcjohnface
closed
2 years ago
1
settings in '--configfile' file not passed to 'script:' rules
#44
beardymcjohnface
closed
1 year ago
1
Hecatomb v1.0.0.beta.2 crash
#43
mihinduk
closed
2 years ago
2
Dev
#42
beardymcjohnface
closed
2 years ago
0
Dev
#41
beardymcjohnface
closed
2 years ago
0
updating hecatomb
#40
mihinduk
closed
2 years ago
1
kill switch
#39
mihinduk
closed
2 years ago
1
mouse
#38
mihinduk
closed
2 years ago
1
Error in rule PRIMARY_NT_reformat
#37
Leran10
closed
2 years ago
4
pipeline requires higher version of conda which has --conda-frontend parameter
#36
Leran10
closed
2 years ago
3
hecatomb's same output files from the same dataset are with different sizes
#35
Leran10
closed
2 years ago
10
missing python package
#34
mihinduk
closed
2 years ago
1
Dev
#33
beardymcjohnface
closed
2 years ago
0
Dev
#32
beardymcjohnface
closed
3 years ago
0
Dev
#31
beardymcjohnface
closed
3 years ago
0
Contaminant removal update
#30
beardymcjohnface
closed
3 years ago
0
megahit -> flye reformatting
#29
mihinduk
closed
3 years ago
1
For NextSeq samples, maximum HTCF memory insufficient for merge seqtable step in R
#28
mihinduk
closed
3 years ago
1
flye "Looks like the system ran out of memory"
#27
mihinduk
closed
3 years ago
3
two concerns with the convert_phyloseq_euk_viral_glom.r standardized count table (species)
#26
RachelRodgers
closed
1 year ago
0
WorkflowError in line 122 of 01_contaminant_removal_hosts.smk: Resources function did not return int.
#25
Leran10
closed
3 years ago
1
the "Running on Slurm" part in the INSTALLATION.md file has an extra space in parameter -o
#24
Leran10
closed
3 years ago
0
Update phage lineages
#23
linsalrob
closed
3 years ago
0
Streamline file zipping and unzipping
#22
shandley
closed
3 years ago
0
Streamline fastq vs fasta file usage
#21
shandley
closed
3 years ago
0
additional script to merge new data with old at seqtable_merge.R level
#20
mihinduk
closed
1 year ago
3
convert_phyloseq.R
#19
linsalrob
closed
3 years ago
1
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