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Hi,
I was running the example scripts for HOOMD-Blue umbrella sampling and I am getting the following error.
******ubuntu-20.04.4.sif I have no name!@cs001 HOOMD]$ mpiexec --mca btl self -np 12…
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How do we visually summarize a MSM?
- Naive: draw a network where the nodes are exemplars of each state and edges are transition rates, e.g.
:
```
@njzjz-bot 2312.15492
```
[The GitHub Actions will reply](https://github.co…
njzjz updated
5 months ago
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@mastrof, maybe we can discuss what you commented in this post: https://github.com/JuliaDynamics/Agents.jl/issues/884#issuecomment-1732556853
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# Contribute content
## Contributor/requester
> Contact information about the person contributing/requesting the data. Used for communication purposes.
**Name**: Josh Vita
**Email**: vita…
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Describe data for clarity and sharing
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When I run the FM1 tutorial example with the following execution:
```
(sire) spadavec@Crandall:~/itx/sire_example/ligandswap$ ligandswap -t0 rec_fmc.top -c0 fmc.30.crd -l0 FM1 -t1 rec_cti.top -c1…
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DiffEqJump now has spatial SSAs. Thats awesome.
I was wondering whether modeling interparticle forces between pair of molecules is important in this area of jump processes on spatial grids. (Not v…
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It might be a good idea to add the possibility to run SENPAI with simulation parameters loaded from an external file.
This would for example ease running the same simulation on multiple files in seq…