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@jjgao commented on [Fri Dec 22 2017](https://github.com/cBioPortal/GSoC/issues/40)
**Background**:
Signatures of mutational processes in human cancers can be inferred from somatic mutations data…
jjgao updated
4 years ago
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I tested SPLASH with a couple of samples, however I am not sure that I understand the correct way to proceed when having an specific experimental design. In my case, I have 2 types of samples, one set…
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I want to upload my own column to cbioportal docker image. So, referring to the link[https://docs.cbioportal.org/5.1-data-loading/data-loading/file-formats#mutation-data], I wrote the input files acco…
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If any test arrives at a `halt` during the mutation, then the debugger is open (and stops the analysis until proceed).
I would like to interpret this as a fail (broken the test), so the mutator sho…
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Hi! Dr. Dou,
Thank you for developing this great software Monopogen for both germline and somatic SNVs detection in single-cell sequencing data. We found it very efficient in somatic mutations call…
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The first version of the performant restore will be released in FDB 6.3 as an experimental feature. It thus closes the issue https://github.com/apple/foundationdb/issues/1049.
The performant restor…
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I think your proposed experiment is well designed, has an adjustable scope that you can expand on later down the line, and has very clear short- and long-term goals.
I have a minor proposition. Wha…
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Project UUID: cddab57b-6868-4be4-806f-395ed9dd635a
Project Title: Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.
Proj…
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Real data sources to use:
1. Mutations from the [AWS S3 MultiAssayExperiment for ACC](https://github.com/waldronlab/MultiAssayExperiment/blob/master/inst/extdata/miniACC.R)
2. ABSOLUTE copy number c…
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Hello,
Thank you for developing this program! I'm currently struggling to plot the results of an A00 analysis, with nodes converted to real time based on a pedigree mutation rate. I see that there …