-
```
Error executing process > 'pVACseq (sample1)'
Caused by:
Process `pVACseq (sample1)` terminated with an error exit status (1)
Command executed:
pvacseq run \
--iedb-install-d…
gri11 updated
5 months ago
-
**Describe the bug**
When I run the example code:
```
if (is_mhcnuggets_installed()) {
peptides
-
Hi
I seem to have a problem with the MHC-I_rank_peptides.py script. The script generates the random_peptides.txt file but then freezes at the next stage. I don't know if the issue here is memory re…
-
Hi, I'm working on a project to extract features from PAAD patients from the ICGC database for neoantigen immunogenicity prediction in ML. This project follows the steps taken by the model creators. I…
-
Hi @riederd,
Thanks for your great end-to-end tool.
I encountered an installation problem using commands below:
`mamba env create -f assets/nextNEOpi.yml`
And the error message is like:
Wou…
-
### Description of the bug
It seems that Ensembl archives are maintained for 5 years which means that the apr2018 version for GRCh38 is no longer available.
### Command used and terminal output
```…
-
Hello sir,
We used the MotifViewer function in NetMHCpan4.1, and found that HLA-B*15:18 has it‘s peptide Motif. But when we searched HLA-B*15:18 in IEDB database, we can only find 5 positvie p…
-
-
Hi nextNEOpi developers:
Thank you very much for your previous support.
I am running the test sample using nextNEOpi, it appears to create results, but at the end, there is an error:
Error exe…
-
Hi,
I noticed that there is an issue with the latest release of the package. In the netMHC.py code line 45 should be changed from:
`if line.startswith(" 1 HLA"):`
to
`if re.match(r'^\s+1 …