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### Description of the bug
Hello,
I am getting the follwoing error when i run tf activity pipeline
Command output:
[1] "Reading genes.gtf elements of type gene"
[1] "Found 0 features"
…
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### Ask away!
Hi, I'm attempting to run the workflow with nextflow + apptainer and keep getting the error message:
```
ERROR ~ Error executing process > 'pipeline:getVersions'
Caused by:
Fa…
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**Describe the issue**
A clear and concise description of what the issue is. Please include the following in your issue report along with any explicit errors observed
* Pipeline release version `5.3…
tgebo updated
3 months ago
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When looking at the list of NAO repos, I always find it hard to remember which of 'mgs-workflow' or 'mgs-pipeline' is which. @jeffkaufman uses 'v1 pipeline' and 'v2 pipeline' to distinguish them. Perh…
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### Description of the bug
I'm getting an issue with a single file on the DEEPTOOLS_PLOTHEATMAP_PEAKS step of the pipeline (out of 140). I'm trying to resume the pipeline but it keeps hanging on this…
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### Description of the bug
When not supplying `--input` (directly or indirectly through use of profile) in a cmd like
```
nextflow run nf-core/sarek -r 3.4.2 -profile docker --outdir results
```
…
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~~Now that RL MLE model fitting library is ready, I'd like to use it as the first MVP of our new analysis pipeline ([doc here](https://alleninstitute.sharepoint.com/:w:/s/NeuralDynamics/EU0Nq3tPleRInc…
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Hello!
I'm trying to run the hadge pipeline (v0.2.0) and am running into issues with the hashing demultiplexing side using conda. Wondering is this part of the pipeline considered stable? Using Nextf…
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We are updating the way containers are built.
Ideally we would like to automatize the developing process and the user-experience when installing the pipeline.
Actions:
- [ ] add dockerfile recepies …
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I have samall nextflow pipelines that do different tasks and need to combine as single workflow to manage on git.