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bbglab
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intogen-plus
a framework for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients.
https://www.intogen.org/search
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IntOGen-plus | build container improvement
#38
FedericaBrando
opened
2 weeks ago
1
Move the containers build to CI
#37
chris-zen
opened
2 weeks ago
0
Move containers build to CI
#36
chris-zen
closed
2 weeks ago
1
Templates for BugReport
#35
FedericaBrando
opened
3 weeks ago
0
When downloading mupit_modbase.sql.gz (Network is unreachable)
#34
JIAJZHAN-Kairos
opened
4 weeks ago
5
IntOGen Plus | Rebuild core container
#33
FedericaBrando
closed
1 month ago
1
[RELEASE24] Documentation update
#32
FedericaBrando
closed
1 month ago
0
Redefinition of BoostDM region dataset
#31
FedericaBrando
closed
1 month ago
1
IntOGen Plus | Update ReadTheDocs
#30
FedericaBrando
closed
1 month ago
1
IntOGen Plus | Update cbase container version from v1.1 to v1.2
#29
migrau
opened
3 months ago
0
IntOGen Plus | 2024 Release
#25
FedericaBrando
opened
3 months ago
0
IntOGen Plus | Check what it is necessary in `extra/` folder
#26
FedericaBrando
closed
3 months ago
2
IntOGen-plus | Add helthcheck for regions
#23
FedericaBrando
opened
4 months ago
0
IntOGen-plus | Combination fails if gene has no symbol
#22
FedericaBrando
closed
4 months ago
2
FIX: Regions adapted to MANE
#21
FedericaBrando
closed
4 months ago
0
IntOGen-BoostDM connection | redefine regions
#20
FedericaBrando
closed
4 months ago
9
IntOGen-plus | unfiltered drivers shows NaNs
#19
FedericaBrando
closed
4 months ago
2
IntOGen Plus | Add filtering of MNVs to the parsed output of VEP
#27
FedericaBrando
opened
5 months ago
0
IntOGen v2024 | Check FAIL cohorts
#18
FedericaBrando
closed
5 months ago
1
update: saturation step to retrieve MANE transcr.
#17
FedericaBrando
closed
5 months ago
0
update: cgc dataset to v99 + minors
#16
FedericaBrando
closed
5 months ago
0
IntOGen Plus | Update cbase container version from v1.0 to v1.1
#15
FedericaBrando
closed
6 months ago
0
IntOGen Plus | Update SEISMIC to fast version
#14
FedericaBrando
closed
6 months ago
1
IntOGen Plus | Revise `vep.py` VALID_CONSEQUENCE set
#13
FedericaBrando
closed
5 months ago
8
IntOGen Plus | Oncodrive3D v0.1 + LHS combination
#12
FedericaBrando
opened
7 months ago
1
IntOGen Plus | Grid search for fitting the optimal method combination is inefficient and not scalable
#11
koszulordie
opened
9 months ago
6
IntOGen Plus | Oncodrive3D implementation and testing
#10
FedericaBrando
opened
10 months ago
4
IntOGen plus | data build - HotMAPS pdb download fail
#9
FedericaBrando
closed
10 months ago
1
IntOGen plus | data build - Hotmaps mupit_modbase.sql failing
#8
FedericaBrando
closed
10 months ago
3
IntOGen plus | Update CGC dataset version
#7
FedericaBrando
closed
5 months ago
2
hotfix: Build file for combination container (#5)
#6
FedericaBrando
closed
10 months ago
0
IntOGen plus | Combination container fail build
#5
FedericaBrando
closed
10 months ago
0
IntOGen plus | CBase error few mutated cohort
#4
FedericaBrando
closed
9 months ago
10
IntOGen plus | Update to MANE transcript
#2
FedericaBrando
closed
5 months ago
13
IntOGen Plus | git lfs track dndscv.tar.gz
#1
FedericaBrando
closed
1 year ago
1