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## Version of Singularity:
latest pull from master
### Expected behavior
build image in specific tmpdir
### Actual behavior
````
SINGULARITY_TMPDIR=/var/singularity/tmp singularity …
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We're trying to use the ```orf_find(prots_out)``` argument, but keep getting errors. How do we use this?
Any insight would be greatly appreciated.
Here's what we've tried and the corresponding e…
kubu4 updated
5 years ago
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Hi,
I'm trying to filter reads based on quality and remove human reads, but I have the following error:
```
Exiting after internal error. If you can reproduce this issue, please run your script wit…
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Current master dc769d7 fails with:
```
[Mon 29-10-2018 02:23:33]: Script OK. Starting interpretation...
[Mon 29-10-2018 02:23:33] Line 6: Running garbage collection.
[Mon 29-10-2018 02:23:33] Li…
unode updated
6 years ago
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The format is not formally described but is used in the wild. On a quick search there was no mention on how 'singles' are handled. Possibilities include:
1. Output `.1` followed by `.2` and add sin…
unode updated
5 years ago
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```
external(file="/input.fa")
```
called with `ngless --search-dir data=/somedir` results in calling `external()` with `/input.fa` instead of `/somedir/input.fa`.
Testcase [here](https://gist.g…
unode updated
6 years ago
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```
samples = [
"projectA/sampleA1",
"projectB/sampleB1"
]
lock1(samples)
```
errors with:
```
[Sat 05-05-2018 17:07:20] Line 13: Interpreting [assignment]: lock1(Lookup 'samples' as …
unode updated
6 years ago
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Hi all,
While using and developing [jug_schedule](https://gitlab.com/unode/jug_schedule) I've come across several design issues that boil down to the question:
* How can I tell if a task has fai…
unode updated
6 years ago
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Hey @luispedro , thanks for using the `argparse2tool` to generate CWL descriptions in https://github.com/luispedro/ngless/tree/master/scripts
However there are no `output` stanzas as `argparse` mod…
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### arg1 fails if of `atype: 'str'`
Using `Modules/test.ngm/0.1/module.yaml`:
version: '0.1'
name: 'test'
functions:
-
nglName: "test"
arg0: './d…
unode updated
6 years ago