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Hi Snakemake team,
**Is your feature request related to a problem? Please describe.**
I created a NGS processing pipeline on a slurm hpc so my colleague can run it and then we share the results/…
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# 課題意識
- free-nagasaki-3dtiles の反省は、三次元タイルのデータが重すぎることである。
- 具体的には、点のデータが稠密すぎる。
# 解決案
- PDAL の `filters.sample` を使ってサンプルする。
# まずやるべきこと
- 実際にサンプルしてみてどのくらいデータが変化をするか理解する。
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This issue is to explore the overview of Bioinformatics
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```
What steps will reproduce the problem?
1.-bash-4.1$ ngs.plot.r -G hg19 -R genebody -C
/srv/gsfs0/projects/cho/riboseq/bam/R10_Rluc_control_arsenite_R1.hg19.bam -O
R10.genebody
.
What is the exp…
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### Description of the bug
Hello,
I am trying to run GSEA but I get an error when trying to process the GMT file I obtained from MSigDB.
Previously, I have executed the pipeline without the G…
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Hello, we need this software of analyze our RNA-seq data. Could you install it as a module by following their easy instructions? There is a Quick Start link on the website below.
Thanks,
Dahon…
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```
What steps will reproduce the problem?
1. install python 2.7 in debian squeeze via pythonbrewer
install RSeQC v 2.3.1-2.3.4 in custom location
2. run bam_stat.py on a bam file from ion torrent…
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Hi All
Orange is a great package,the GUI is great, the functionality is great and has been a fantastic resource to help some of our students overcome their fear to Machine Learning and computer/data s…
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Late suggestion, but I would be interested in discussing how R can be used on high-performance clusters. In my case that's a university cluster, but I imagine people are doing this in lots of differen…
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Hi,
I am using this pipeline to reanalyze some data from Illumina Novaseq PE250bp.
And I have noticed that in this paper , they sequenced at Hiseq PE250bp (McNichol, J., Berube, P., Biller, S.…