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See https://forum.image.sc/t/multiple-omero-tables-crash-omero-parade/72477
Currently we do this in `table_filters/data_providers.py`, which picks a "random" table since `_bulk_file_annotations()` …
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See https://github.com/ome/ZarrReader/pull/31#issuecomment-1113459183 and https://github.com/ome/ZarrReader/pull/31#issuecomment-1113477796 for background.
First suggestion would be:
1. Any syste…
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idr0001 has 192 x 96-Well Plates, 6 acquisitions each.
1 Plate converted [below](https://github.com/IDR/idr-metadata/issues/683#issuecomment-1886903270) is 47 GB.
Approx 4.5 TB in total.
bioformats…
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Looking at the generated `bin/omero` from https://github.com/ome/ansible-role-omero-server/pull/40:
```
#!/opt/omero/server/venv3/bin/python
import os
from subprocess import run
import sys
…
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Observing an issue of slow service when images are being rendered.
1.
docker-compose run locally on M1 (first description of the general narrative):
- ``touch "foo&sleepOpenBytes=10000.fake"`…
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See https://forum.image.sc/t/omere-figure-export-pdf-does-not-work/39573/30
On release, we should update the omero-server Docker with the Pdf export script, as well as the omero-web Docker.
That w…
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In omero-web, I think there may be a race when this :
./bin/omero config set omero.web.server_list "[[\"omero_server\", 4064, \"omero\"]]"
can be called before the omero user is in the database…
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provide script to convert orbit annotation to omero annotation
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There are a handful of queries that attempt to load a large amount of data on a large server such as IDR.
These can be slow and need to be cached.
One option is to use the https://github.com/ome…
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Within #671, it appears that the MIP-images zattrs do not include `wavelength_id` in the `omero` metadata.
Here is how this leads to a cellpose-task error:
```python traceback
TASK ERROR: Task na…