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rpy2 doesn't install cleanly on a Mac via pipenv. This leads to the following error when starting the app
```
Exception in thread django-main-thread:
Traceback (most recent call last):
File "/Us…
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- [x] add Vardict
- [x] determine whether nf-core version suites are needs
- [x] If it does, add and use as is. If it doesn't, add to msk/modules.
- [x] add Mutect
- [x] determine whether…
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Scaling Search Capabilities
There are a large number of metadata entries generated from the functional annotation workflow. There are currently 397M raw annotations which we aggregate into 3.3M quer…
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check the Darwin core list (from Katrina) to the MIxS checklist to the list Ioulia has to the info Genoscope is senting us
decide on what we keep
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Hello, it is mentioned in the paper that scGPT can utilize multi-omics data. May I ask if it is possible to use scATAC data for pre-training? Or how can such related data be used for fine-tuning downs…
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I've been able to run metaerg successfully with and without providing a depth file on some of my datasets using:
metaerg.pl --dbdir /projects/p30777/db --depth /projects/p30777/metagenome_data/bam…
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Hi,
For displaying omics data on reactions, for example, RNAseq, I would like to display different kind of elements instead of the textual GPR associations. Below is a handcrafted example prepared by…
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Dear EMP community,
I was wondering if the microbially-related metabolite feature table and Normalized microbe feature table were available for download (I am referring to the tables that were used t…
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### What kind of feature would you like to request?
Other?
### Please describe your wishes
This would speed up normalization
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Suggestion for potential improvement. The individuals:measures object (https://github.com/ga4gh-beacon/beacon-v2/blob/main/models/src/beacon-v2-default-model/common/measurement.yaml) including assayCo…