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Dear team,
Thanks for the powerful package!
My infercnv version is 1.10.1 and I'm trying to generate phylogenetic trees with subclustering info using Uphyloplot2. So I use the random_trees m…
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* [Home · marbl/Krona Wiki](https://github.com/marbl/Krona/wiki)
* [cpauvert/psadd: PSADD -- PhyloSeq ADDitions](https://github.com/cpauvert/psadd)
* [plot_krona: Interactive Taxonomy plot with Kron…
bbest updated
6 years ago
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Hi,
I am trying to merge two phyloseq objects containing samples from different environments. I have used QIIME2 and Deblur to clean the data and obtain the phylogenetic tree, etc.
I can success…
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Advanced Newick formats support punctuation in _quoted_ labels;
> Unquoted labels may not contain blanks, parentheses, square brackets, single_quotes, colons, semicolons, or commas.
— http://ev…
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Hi, @thomasp85
First of all, thank you for this great package!
I've been trying to use {ggraph} to create a dendrogram that preserves tip lengths as `plot.hclust()` does, but I can't seem to ma…
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Hi, Thank you for building this tool. It is really great and quite user friendly.
What are the advantages or disadvantages of using nucleotide sequences as the input to orthofinder versus using ami…
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These are important ideas and methods central to evolutionary biology, but it's easy to fall behind on the current best practises and "gold standard". It would be great to discuss this with more and l…
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We have to think about basic principles of functions.
1. Less functions is better --> remove aliases, combine similar functions
2. Utilize capabilities of `TreeSE` more --> return `TreeSE` if poss…
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Hi Liang,
I have gene trees consisted by 106 species. When I run the `mp-est v2.1`, the segment fault occured. I applied `mp-est v2.0` using the same control file and gene tree files without erro…
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Hi,
I am Taraka a post-doc working with linguistic phylogenetics. I implemented my MH sampler for sampling trees and other model parameters.
My code which runs mcmc process is here:
https://gith…