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### Team Name:
qnyble
### Project Description:
RNAs are nucleotide polymers fundamental to a diversity of elementary biological functions, including the (de)coding and regulation of genes, …
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While we ask you to address all of the points raised, the following points need to be substantially worked on:
- [x] Consider the missing references pointed out by Referees 2 and 3 (see below).
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Hi,
_For reference, I am running the latest version of parmed v3.4.3_
I have a GROMACS .top file for a protein-ligand system using the Amber 99sb-idln forcefield (NB I was not the one to paramet…
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spotlight still atttached to old session
https://ftp.pombase.org/reference/PMID:34279633
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The authors addressed most of my minor concerns but failed to address my major critique simply because they do not know how to produce a molecular dynamics (MD) trajectory for testing. It is in within…
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Hi,
This looks like a very good software. However, I have no clue how to run it, much less MELD-DNA. The documentation that exists seems very intricate and not easily reproducible, and I find no wa…
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Hello,
The last Windows 10 creators update has enabled the possibility use bash / linux system on windows.
I have probe the possibility to use your dynamics plugin on a windows compiled pymol and …
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I am attempting to follow the work flow recommended in the RFDiffusion paper, https://www.biorxiv.org/content/10.1101/2022.12.09.519842v2.
I am obtaining low amino acid sequence diversity in my P…
bwllc updated
11 months ago
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Hi @krchristie
What proteins interact with the RNA polymerase II core promoter? I am looking at annotations to 'GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding' and it see…
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Meeting will be at 2pm UK time on Wed June 8th at https://ucl.zoom.us/j/4808072370
**Aim**: To gather together what is known of the mur ligases from crystallography, and therefore what might be nee…