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**Describe the bug**
There is something fishy with `NM_030582.4`. Take, e.g., this deletion that maps to this transcript: [`NC_000021.8:g.46924426_46924427del`](https://variantvalidator.org/service/v…
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We'd like to develop general functions for predicting one layer of data from the other data type for each dataset (e.g. predict protein abundances from RNA, predict RNA from ATACseq).
Eventually, t…
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- [ ] want modeling and tools for
- [ ] different designation for genes, proteins and enzymes including the organism they come from. See [Gene to Protein encoded
](https://docs.google.com/spreadsh…
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Making perturb executable..
g++ -g -Wall -o ../perturb ./utils.o ./stringutils.o ./vector3.o ./matrix3.o ./matrix.o ./random.o ./config.o ./atom.o ./residue.o ./chain.o ./system.o ./pairint.o ./lji…
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Objectives of the tool:
- Create a subdirectory to store the essential information (files) needed for review
- Create a Tiered and Annotated report table that makes it more clear which fusion cand…
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Dear HADDOCK3 Development Team,
I hope this message finds you well. I am currently looking to perform batch docking between various proteins and peptides to identify candidate proteins. However, I …
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### Figure 1 | The SysNDD Concept, Curation Approach, and Tools
**Description:** This figure should illustrate the overall concept of SysNDD, including its purpose, the curation process, and the tool…
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The work is incredibly constructive, particularly for RFdiffusion, which traditionally struggles to produce stable short peptides in the range of 10 to 30 amino acids.
Despite this, after a week of …
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The score structures stage (stage 6) generates `structure_scores` files and `all_fragment_scores/frag_scores` files. Per the README and reading some of the closed github issues, the recommendation to …
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**Website Interface Aims**
* Website split into 3 sections
1. Protein Kinase Search Engine
2. Inhibitor Search Engine
3. Field to upload tsv file
* General Look: With tabs for the s…