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Hello,
I was performing some tests and it seems that there is a minimum number of protein structures to train a model. I have tested datasets with 2 through 10 structures (similar domains) and the …
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Add a feature to candi that allows the user to retrieve sequences pertaining to a given mutation.
Will need to add functions that retrieve relevant genome builds in mutational data.
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I have observed negative bits score for some pairs of protein structures in an all-against-all comparison of a collection of structures. I don't understand how this is possible, because Smith-Waterman…
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Thank you for contributing this repository to the community!
I want to use ProSST for my own dataset. Unfortunately, my dataset only contains protein sequences (e.g., "MEAIAKYDFKATADDE") and does n…
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Dear author, you have a pre-trained model on github, on which dataset was this model pre-trained? In your paper, you mentioned using the CATH dataset for pre-training. I think it is an interesting dat…
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Dear Administrator,
scPDB dataset provides protein structures by mol2 format.
To generate machine learning features I used pybel, but Segmentation fault has been occurred for large protein file.
…
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[ASAP-0015381](https://github.com/StructuralGenomicsConsortium/CNP25-CHIKV-nsP3-Macrodomain/assets/133207721/fca7cc25-1a3e-4edc-8abf-217449838c4c) is One of the ASAP potent inhibitors vis SARS-CoV-2-N…
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Title: Flexibility and mobility of SARS-CoV-2-related protein structures
# General Information
## Please paste a link to the paper or a citation here:
Link:
https://www.nature.com/articles…
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Dear author,
Thank you very much for your great contribution to the community and I am very interested in your research! However, it is a great pity that when I reproduced your work, I found t…