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Hello,
when running FragPipe in headless mode (analyzing a TMT experiment), I get weird TMT channel names. I put an example here: https://oc.embl.de/index.php/s/9iEiAtMw6j0hSMK
In the annotatio…
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**Describe the bug**
I am running open workflow in the headless mode over a timsTOF-pro data/file and got the following error
```
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException…
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Dear Nesvi-lab, any thoughts on what might be going on here?
System OS: Windows 10, Architecture: AMD64
Java Info: 1.8.0_242, OpenJDK 64-Bit Server VM, AdoptOpenJDK
Version info:
FragPipe …
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Hi all,
I was running six data files from timsTOF for DDA LFQ analysis and ended up halting at Percolator step.
Does anyone have a clue on whats this is?
Thanks,
Issued command:
C:\Fragpipe_…
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Hi,
I'm currently using FragPiPe with those specific versions:
Version info:
FragPipe version 17.1
MSFragger version 3.4
Philosopher version 4.1.0 (build 1635640020)
I am using the LFQ-ph…
KR-15 updated
2 years ago
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Trying to analyze glycoproteomic data and received this error:
20:56:17 ERROR: Error delivering events through the bus
java.util.NoSuchElementException: Sticky note not on the bus: com.dmtavt.fra…
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My fragpipe run failed with the error:
```
PhilosopherFilter [Work dir: /home/phusen/prg/UPS_FragPipe/output/12500amol_1]
/home/phusen/SW/fragpipe/tools/philosopher/philosopher filter --sequentia…
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Hello,
I tried to process my .d Bruker timsTOF data and encountered this error that I never saw before.
I saw an older post on the same error and it suggested that it could be due to the data. So …
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Hello.
I’m trying to install mzR on a Raspberry Pi 4, and I’m struggling with it. Frankly, I'm very stuck and I don't know how to move forward.
I'm suspicious about: the compiler? Or maybe there…
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Hello,
I wanted to analyze a simple label-free experiment (it's after an acid hydrolysis of a gel band). Unfortunately, the philosopher pipeline does not finish, since the PSM list is empty. Analy…