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# Issue Report
## Please describe the issue:
Hello, I am currently performing target-specific custom barcode demultiplexing using Direct RNA seq data.
In the options, there is a setting for m…
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Hello,
I'm getting an error when trying to run croo after a successful run of the encode rna-seq-pipeline. My version of croo is 0.6.0
The command I ran is
`croo /storage/aadams/scripts/encode…
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Hello
My major field is medicine and I am new to python code.
I try to analyze the RNA-seq and survival data with OmiEmbed.
RNA-seq data (A.tsv) and survival data (survival.tsv) are located in 'd…
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Project Title: Systematic comparative analysis of single cell RNA-sequencing methodsProject UUID: 88ec040b-8705-4f77-8f41-f81e57632f7dWrangler/s: Chris,,Villarreal; William,G,Sullivan; Parisa,,Nejad; …
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![Schematic_of_a_typical_single-cell_RNA-seq_analysis_workflow](https://user-images.githubusercontent.com/78339135/134680696-4a7deb04-cf37-4915-8996-70aa389c4403.jpg)
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Well explained tool for Single-cell RNA seq data normalisation !
Hi,
So we are normalising the Single-cell RNA seq data and we now have to normalise the allelic read counts. Scnorm seems to b…
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- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
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### Week 1 (Jay)
- [ ] Setting up laptops and Rstudio
- [ ] Tidyverse overview Graphing review and tweaks
#### Homework
Use ggplot2 to make the most hideous plot you can. Must be a reproduci…
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Hello members,
I am currently working with TPM expression data obtained from RNA-seq analysis, and my dataset includes a diverse range of biotypes such as miRNA, lncRNA, pseudogenes, etc., resultin…
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Overlap and perform analysis as in #28
## Changes
- RNA-seq data is from literature.
- **`rna_cutoff`**: Instead of using (`lfc > 1` & `qval < 0.05`), now we only use (`lfc > 1`).
## Results d…