williamritchie IRFinder issues

williamritchie / IRFinder

Detecting intron retention from RNA-Seq experiments

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issues

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which model to run

#191 adi8897 opened 1 week ago
0
Missing genes in IRFinder-IR

#190 Nathan-Lecouvreur opened 2 months ago
1
Problems when building the Reference(T2T-genome)

#189 MG-DYM opened 4 months ago
1
Minimum Number of RNA-seq reads

#188 cinnamon6 opened 7 months ago
2
refrence genome

#187 adi8897 opened 7 months ago
4
Issue with Reference Building Process in IRFinder

#186 inagaki-s opened 7 months ago
2
results of Generalized Linear Model with Replicates

#185 adi8897 opened 8 months ago
4
REF issue

#184 wittney-m closed 8 months ago
1
building IR-finder REF

#183 adi8897 opened 8 months ago
1
IR-FINDER-S

#182 adi8897 closed 8 months ago
1
Running BuildRef

#181 ian-bda closed 8 months ago
5
error in trim

#180 wittney-m opened 8 months ago
3
Perl Error when building Ref

#179 liscruk opened 9 months ago
2
IR finder genome creating

#178 adi8897 closed 10 months ago
0
problem with running IR finder

#177 adi8897 opened 10 months ago
1
Spliced and Unspliced Reads Information

#176 cinnamon6 opened 10 months ago
2
Differential IR analysis for intron not in ref-cover.bed

#175 geocarvalho closed 11 months ago
2
The differential IR location information from IRFinder output and ENSEMBLE database doesn't match.

#174 CYcodeworld opened 1 year ago
1
differential IR analysis

#173 Ananya1006 opened 1 year ago
1
Building reference

#172 pillailab opened 1 year ago
1
Use env to find perl

#171 rhagenson closed 1 year ago
0
Do the input fastq files have the same number of lines?

#170 44314474 opened 1 year ago
2
Reference Building Failed

#169 Lei-Guo closed 1 year ago
7
reference build failure

#168 ChiaraCaprioli closed 1 year ago
16
Error: Type checker found wrong number of fields while tokenizing data line (while building reference)

#167 sheilazuniga opened 2 years ago
5
IRFinder for scRNA-seq data

#166 me37uday opened 2 years ago
11
Differential IR Analysis output

#165 rohbs closed 2 years ago
1
Failed reference Building

#164 akhats opened 2 years ago
3
IRFinder used on other species?

#163 duchen-whu closed 2 years ago
2
Fastq file error

#162 ericabrophy opened 2 years ago
4
IRFinder on total RNAseq libraries

#161 ojziff opened 2 years ago
1
Generalized Linear Model with Replicates

#160 CYcodeworld opened 2 years ago
2
problems generating reference

#159 william-hamilton closed 2 years ago
7
Sorted vs. unsorted input files for IR quantification

#158 kethselly closed 2 years ago
2
Problem with Reference Building of Drosophila gtf file

#157 kethselly closed 2 years ago
7
DIR Analysis ~ DESeq2 vs Audic and Claverie test

#156 LedaKatopodi closed 2 years ago
4
BuildRefProcess does not complete

#155 Zack-Ely opened 3 years ago
2
Force the output of IRFinder-IR-dir.txt?

#154 viktor-hub closed 3 years ago
10
intergenic. ROI.bed wtih size 0

#153 aiyicen2 closed 3 years ago
4
IRFinder appears not to have completed. It appears an unknown component crashed

#152 CYcodeworld opened 3 years ago
5
Estimate Gene Expressions in Predicted IRs

#151 cherlynty closed 3 years ago
7
Problem on IRratio calculation and coverage

#150 LeihuanHuang opened 3 years ago
2
DESeqDataSetFromIRFinder error

#149 ojziff opened 3 years ago
0
confusion with input type

#148 me37uday closed 3 years ago
9
substantially non-successful run

#147 ClariHC opened 3 years ago
5
Issue building the reference

#146 seanbyars closed 3 years ago
2
About the warning message

#145 Codezy99 opened 3 years ago
1
Quantify IR for single end bam files

#144 me37uday opened 3 years ago
1
Problems building the Reference

#143 ClariHC closed 3 years ago
18
test all transcript biotypes

#142 ojziff opened 3 years ago
4