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williamritchie
/
IRFinder
Detecting intron retention from RNA-Seq experiments
MIT License
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Minimum Number of RNA-seq reads
#188
cinnamon6
opened
1 month ago
2
refrence genome
#187
adi8897
opened
1 month ago
4
Issue with Reference Building Process in IRFinder
#186
inagaki-s
opened
2 months ago
2
results of Generalized Linear Model with Replicates
#185
adi8897
opened
2 months ago
4
REF issue
#184
wittney-m
closed
2 months ago
1
building IR-finder REF
#183
adi8897
opened
2 months ago
1
IR-FINDER-S
#182
adi8897
closed
2 months ago
1
Running BuildRef
#181
ian-bda
closed
2 months ago
5
error in trim
#180
wittney-m
opened
3 months ago
3
Perl Error when building Ref
#179
liscruk
opened
3 months ago
2
IR finder genome creating
#178
adi8897
closed
4 months ago
0
problem with running IR finder
#177
adi8897
opened
4 months ago
1
Spliced and Unspliced Reads Information
#176
cinnamon6
opened
4 months ago
2
Differential IR analysis for intron not in ref-cover.bed
#175
geocarvalho
closed
5 months ago
2
The differential IR location information from IRFinder output and ENSEMBLE database doesn't match.
#174
CYcodeworld
opened
8 months ago
1
differential IR analysis
#173
Ananya1006
opened
9 months ago
1
Building reference
#172
pillailab
opened
1 year ago
1
Use env to find perl
#171
rhagenson
closed
1 year ago
0
Do the input fastq files have the same number of lines?
#170
44314474
opened
1 year ago
2
Reference Building Failed
#169
Lei-Guo
closed
1 year ago
7
reference build failure
#168
ChiaraCaprioli
closed
1 year ago
16
Error: Type checker found wrong number of fields while tokenizing data line (while building reference)
#167
sheilazuniga
opened
1 year ago
5
IRFinder for scRNA-seq data
#166
me37uday
opened
1 year ago
10
Differential IR Analysis output
#165
rohbs
closed
1 year ago
1
Failed reference Building
#164
akhats
opened
1 year ago
3
IRFinder used on other species?
#163
duchen-whu
closed
2 years ago
2
Fastq file error
#162
ericabrophy
opened
2 years ago
4
IRFinder on total RNAseq libraries
#161
ojziff
opened
2 years ago
1
Generalized Linear Model with Replicates
#160
CYcodeworld
opened
2 years ago
2
problems generating reference
#159
william-hamilton
closed
2 years ago
7
Sorted vs. unsorted input files for IR quantification
#158
kethselly
closed
2 years ago
2
Problem with Reference Building of Drosophila gtf file
#157
kethselly
closed
2 years ago
7
DIR Analysis ~ DESeq2 vs Audic and Claverie test
#156
LedaKatopodi
closed
2 years ago
4
BuildRefProcess does not complete
#155
Zack-Ely
opened
2 years ago
2
Force the output of IRFinder-IR-dir.txt?
#154
viktor-hub
closed
2 years ago
10
intergenic. ROI.bed wtih size 0
#153
aiyicen2
closed
2 years ago
4
IRFinder appears not to have completed. It appears an unknown component crashed
#152
CYcodeworld
opened
2 years ago
5
Estimate Gene Expressions in Predicted IRs
#151
cherlynty
closed
2 years ago
7
Problem on IRratio calculation and coverage
#150
LeihuanHuang
opened
2 years ago
2
DESeqDataSetFromIRFinder error
#149
ojziff
opened
2 years ago
0
confusion with input type
#148
me37uday
closed
2 years ago
9
substantially non-successful run
#147
ClariHC
opened
2 years ago
5
Issue building the reference
#146
seanbyars
closed
2 years ago
2
About the warning message
#145
Codezy99
opened
2 years ago
1
Quantify IR for single end bam files
#144
me37uday
opened
2 years ago
1
Problems building the Reference
#143
ClariHC
closed
2 years ago
18
test all transcript biotypes
#142
ojziff
opened
3 years ago
4
gzip: .gz: No such file or directory
#141
me37uday
closed
3 years ago
0
Questions regarding DESeQ2 analysis of intronic reads
#140
me37uday
closed
2 years ago
12
Is IRFinder suitable for C.elegans IR analysis
#139
Bigzhangwei
opened
3 years ago
4
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