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williamritchie
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IRFinder
Detecting intron retention from RNA-Seq experiments
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gzip: .gz: No such file or directory
#141
me37uday
closed
3 years ago
0
Questions regarding DESeQ2 analysis of intronic reads
#140
me37uday
closed
3 years ago
12
Is IRFinder suitable for C.elegans IR analysis
#139
Bigzhangwei
opened
3 years ago
4
LowCoverage warnings across many RNA-seq datasets
#138
glarue
closed
3 years ago
12
Incomplete in reference building
#137
PencilsSharpener
closed
3 years ago
8
Samtools Error during BuildRefProcess
#136
ChristianRohde
opened
3 years ago
1
error because of 3 arguments were found even I put 2 fastq files
#135
qicaibiology
opened
3 years ago
1
No <50 bp introns
#134
pedroilidio
opened
3 years ago
2
Do I need to use the mouse EncodeDacMappabilityConsensusExcludable.bed.gz for mouse reference build?
#133
qicaibiology
closed
3 years ago
2
IRBase appears to be down
#132
h-joshi
closed
3 years ago
4
excessive splice junctions at unannotated locations
#131
NgChongYi
opened
3 years ago
3
Ignore which and dirname exit codes
#130
pedroilidio
opened
3 years ago
0
using LRT in DESeq 2
#129
jscaber
closed
3 years ago
2
IRFinder exits silently in BAM mode
#128
pedroilidio
opened
4 years ago
4
NO files: IRFinder-IR-dir.txt
#127
ningqiang121
opened
4 years ago
1
Annotation files are correctly recognised
#126
koustav-pal
closed
4 years ago
3
IRFinder does not produce directional output in BAM mode
#125
koustav-pal
closed
4 years ago
7
Reference not finishing the build
#124
aleighbrown
opened
4 years ago
32
IRFinder output: Quantify IR vs Differential IR
#123
ojziff
closed
4 years ago
3
understanding the IR differential analysis
#122
ucbtsh6
closed
4 years ago
1
FATAL error with "analysisWithNoReplicates.pl"
#121
bounlu
closed
4 years ago
8
BuildRefFromSTARRef fails
#120
bounlu
closed
4 years ago
0
Uneven number of replicates
#119
bounlu
closed
4 years ago
1
Error in reference building
#118
ucbtsh6
closed
4 years ago
15
run error on conda installation
#117
pillailab
closed
4 years ago
6
Transcript ID for each retained intron
#116
ojziff
closed
4 years ago
1
Reference building error
#115
edeneng
closed
4 years ago
2
Is it possible to compare more than 2 groups of samples
#114
qicaibiology
closed
4 years ago
2
added quotes around 'sort' for correctly conditional loading the module
#113
dg520
closed
4 years ago
0
"Can't locate _mergesort.pm" when building reference
#112
viktorfeketa
closed
4 years ago
3
removed set -e
#111
dg520
closed
4 years ago
0
removed set -e
#110
dg520
closed
4 years ago
0
Absence of NOVOSORT makes to IRFinder v1.3.1 exit with code 1 but no error message
#109
tbrittoborges
closed
4 years ago
1
Attempting to reach alternatie build reference website, seems down
#108
sscho
closed
4 years ago
1
integration with SIRFindeR
#107
ojziff
closed
4 years ago
1
this program suitable for non model organisn
#106
ucbtsh6
closed
4 years ago
1
applied new method to conditionally use sort arguments
#105
dg520
closed
4 years ago
0
applied new method to conditionally use sort arguments
#104
dg520
closed
4 years ago
0
added a new path to load old Perl sort method by avoiding failure in evaluation
#103
dg520
closed
4 years ago
0
IRFinder 1.3.1
#102
dg520
closed
4 years ago
0
IRFinder-1.3.1
#101
dg520
closed
4 years ago
0
Error in reference building using IRfinder
#100
ucbtsh6
closed
4 years ago
1
p-diff explanation
#99
ojziff
closed
4 years ago
3
reading in technical repeats to IRFinder
#98
ojziff
closed
4 years ago
1
Mapability directory not complete
#97
gabee-chan
closed
4 years ago
9
excessive Mitochondrial component and seemingly not mRNA-seq exp
#96
ahorvath
closed
4 years ago
6
updated Usage structure.
#95
dg520
closed
4 years ago
0
IRFinder-1.3.0-hotfix
#94
dg520
closed
4 years ago
0
Error during reference building
#93
mrashwing
closed
4 years ago
6
IRFinder-1.3.0
#92
dg520
closed
4 years ago
0
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