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williamritchie
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IRFinder
Detecting intron retention from RNA-Seq experiments
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Merge pull request #90 from williamritchie/master
#91
dg520
closed
4 years ago
0
Updated changelog
#90
dg520
closed
4 years ago
0
Update README.md
#89
dg520
closed
4 years ago
0
updated changelog.
#88
dg520
closed
4 years ago
0
IRFinder-1.3.0
#87
dg520
closed
4 years ago
0
transcript_biotype and gene_biotype
#86
OlgaVT
closed
4 years ago
5
Columns on which to filter
#85
andreismol
closed
4 years ago
2
outout files for differential IR
#84
qicaibiology
closed
4 years ago
2
Files missing in output folder
#83
qicaibiology
closed
4 years ago
27
difficulties in buiding IRfinder reference
#82
qicaibiology
closed
4 years ago
12
Download error
#81
qicaibiology
closed
4 years ago
4
segmentation fault; recompilation doesn't fix
#80
glarue
closed
4 years ago
29
Buffer size is too small for some BAM headers
#79
ckmah
closed
4 years ago
2
maxsplice error
#78
jscaber
closed
4 years ago
1
ReadBlockProcessor error
#77
andrea-ag
closed
4 years ago
4
Hotfix
#76
dg520
closed
4 years ago
0
Differential IR Analysis (GLM) Issue
#75
viktor-hub
closed
4 years ago
2
updated the version number
#74
dg520
closed
4 years ago
0
v1.2.6 updates
#73
dg520
closed
4 years ago
0
IRFinder/bin/util/Build-BED-refs.sh: line 186: [: missing `]'
#72
chichaochen
closed
4 years ago
7
IRFinder-1.2.6
#71
dg520
closed
4 years ago
0
ERROR: IRFinder appears not to have completed. It appears an unknown component crashed.
#70
EmmaMcHugh
closed
4 years ago
3
the meaning of "anti-over, anti-near, clean, known exon" in the output file
#69
genemine
closed
4 years ago
1
difference between output file Unsorted.bam and unsorted.frag.bam
#68
bling1000
closed
5 years ago
2
Problem with libraries
#67
SalimMegat
opened
5 years ago
7
Can I use different aligner instead of STAR ?
#66
kaanokay
closed
5 years ago
3
Mapping speed too low in hg19
#65
yangjywhu
closed
4 years ago
4
Mapping speed too low in hg19
#64
yangjywhu
closed
5 years ago
0
BuildRefProcess Possibly Failed?
#63
suz11001
closed
5 years ago
4
error in MacOS: ./IRFinder: line 550: ./util/irfinder: cannot execute binary file
#62
aart127
closed
5 years ago
1
Quant step error. Seems that looks for compressed bam
#61
jmelero611
opened
5 years ago
3
Segmentation fault while aligning
#60
ganguvamshi
opened
5 years ago
1
library advice for Intron retention
#59
ganguvamshi
closed
5 years ago
5
Can I use my own STAR index?
#58
wangshun1121
closed
5 years ago
3
error in quantification
#57
rcyyjiang
opened
5 years ago
1
irfinder.stderr
#56
zhengjiantao
closed
5 years ago
3
Problem with quantification step - ERROR: IRFinder appears not to have completed. It appears an unknown component crashed.
#55
sneha100895
opened
5 years ago
6
segmentation fault
#54
abayega
opened
5 years ago
4
Problem with building reference - EXITING because of FATAL ERROR: could not open genome file
#53
sneha100895
closed
5 years ago
3
Singularity image
#52
CloXD
closed
5 years ago
1
STAR version check
#51
BioLaoXu
closed
5 years ago
1
ERROR: IRFinder appears not to have completed. It appears an unknown component crashed.
#50
xiaoyonf
closed
5 years ago
5
No reads mapped error
#49
jmelero611
closed
4 years ago
1
missing intron events?
#48
hliang
closed
6 years ago
5
Should I fix the parameter sent to 'generateReadsError.pl' to fit for my data?
#47
yang91
opened
6 years ago
3
Questions on total RNA seq data
#46
ghost
closed
6 years ago
5
IRFinder-1.2.5
#45
dg520
closed
6 years ago
0
IRFinder-1.2.5
#44
dg520
closed
6 years ago
0
Column header for IRFinder-IR-nondir.txt
#43
lpantano
closed
6 years ago
2
component crash
#42
poflawless
closed
6 years ago
2
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