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Hi, kind regards.
When I run the example, I got an error. Can you please help me ?
My command is
"python2 ~/software/ANGeS-master/src/MASTER/anges_CAR.py PARAMETERS_OUANGRAOUA_ET_AL_2011_BOREOEUT…
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**Submitting author:** @nfrerebeau (Nicolas Frerebeau)
**Repository:** https://github.com/tesselle/aion
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.2
**Editor:** @martinflei…
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Hi ! I am using a loop to plot UMAPs of beta diversity across a few phenotypes. I get the follow error-
biom
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I am trying to construct ancestral chromosomes using ANGeS for 8 plant genomes, and having problems with the input marker file. I have Orthofinder output as well as MCscan and trying to combine the ou…
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Package "seriation" is misspelled.
https://github.com/talgalili/dendextend/blob/e4e303219a94840d2ad3c02d8be14701565b6bd4/R/seriate_dendrogram.R#L59
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NAs in otu_table are not handled informatively by ps_counts and any functions that call ps_counts, e.g. comp_barplot
Instead, an uninformative error is thrown.
``` r
library(phyloseq)
library(mi…
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I am running ancombc2 on the data outlined in the tutorial and my own data but I do not get any passed_ columns in my output object. I am following the tutorial exactly is the latest version still sup…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/HSU-HPC/HarmonizR
Confirm the following by editin…
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Hi,
I'm trying to run the Transcription factor activity inference from scRNA-seq on my dataset.
When trying to get the network with:
`net # A tibble: 43,178 × 3
#> source target mor
#>…
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Hi, I installed SeuratData pmbc3k and pbcmcsa to try to follow this vignette https://satijalab.org/seurat/articles/integration_mapping.html because azimuth was not working for me, and I am able to l…