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Hi I installed NCBI BLAST+ 2.5.0 from the tool shed and I am using it as a dependency for a serotyping tool wrapper. But every time I run my tool it I get the following error
main] Real time: 19…
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would have to mount the folder with all the genome files to `/datastore` in docker containers
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ECI-2523.fsa with pi: 90 for Serotype VF
Submitted: 2018-06-22 10:35:25 AM, Status: FAILED
ERROR WITH JOB: pipelined1218b6d80d39bec9b17cb87257a24537a4e4e74
Traceback (most recent …
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I tried to reprdouce the results from https://peerj.com/articles/2477/ on the validation dataset with PneumoCat v.1.1. However, the result for several samples was serotype 45 and 19C in the second val…
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Do you think you could make this pip installable?
In terms of writing a Brew or Conda package for it, would hate to waste effort now.
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Some affiliations are repeated many times in the output. For example...
mlg2007 FALSE_POSITIVE 0 0 Monica L Guzman 9049396 Molecular epidemiology of dengue-1 and dengue-4 viruses. The Jou…