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superphy
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spfy
Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
https://lfz.corefacility.ca/superphy/grouch/
Apache License 2.0
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Drop "Loose" Cut_Off values from RGI
#326
kevinkle
closed
6 years ago
0
Badge
#325
kevinkle
closed
6 years ago
0
Merge: Bash script + update production docs
#324
kevinkle
closed
6 years ago
0
Merge: more descriptive VF results
#323
kevinkle
closed
6 years ago
0
More descriptive VF results
#322
kevinkle
closed
6 years ago
2
Bash script to start up spfy
#321
kevinkle
opened
6 years ago
0
fix: ectyper bug
#320
kevinkle
closed
6 years ago
0
conda....
#319
kevinkle
opened
6 years ago
0
edit: return blank instead of Exception
#318
kevinkle
closed
6 years ago
0
gene_dict empty?
#317
kevinkle
closed
6 years ago
7
update: grouch
#316
kevinkle
closed
6 years ago
0
fix: resulttl -1 for serotype/vf
#315
kevinkle
closed
6 years ago
0
Merge: basic search function
#314
kevinkle
closed
6 years ago
0
Document production deployment
#313
kevinkle
opened
6 years ago
1
Merge: update search branch with master
#312
kevinkle
closed
6 years ago
0
Refactor Phylotyper Integration
#311
kevinkle
opened
6 years ago
0
TypeError: can't compare datetime.datetime to int
#310
kevinkle
opened
6 years ago
0
Merge: Fixes issues when ECTyper doesn't find all alleles for Phylotyper
#309
kevinkle
closed
6 years ago
3
AssertionError
#308
kevinkle
opened
6 years ago
2
CalledProcessError: Command '['phylotyper', 'genome', '--noplots', 'stx2', '/datastore/ptstx2I2yYBQ', '/datastore/pts...
#307
kevinkle
closed
6 years ago
2
merge: full names for amr
#306
kevinkle
closed
6 years ago
0
MERGE: RGIv4 Update
#305
kevinkle
closed
6 years ago
0
report pi instead of strict/perfect
#304
kevinkle
closed
6 years ago
2
loading spinner for fishers
#303
kevinkle
closed
6 years ago
1
report full hit names instead of short names?
#302
kevinkle
closed
6 years ago
3
upload genbank closed genomes
#301
kevinkle
closed
6 years ago
1
ui: separation of main functions and extra functions
#300
kevinkle
closed
6 years ago
1
investigate why stop/stop codons are identical
#299
kevinkle
closed
6 years ago
1
quick search function
#298
kevinkle
closed
6 years ago
12
more descriptive cards
#297
kevinkle
closed
6 years ago
1
Update `rgi=3.1.1=` to `rgi-4.0.3`
#296
kevinkle
closed
6 years ago
7
AuthError
#295
kevinkle
opened
6 years ago
0
AttributeError: 'str' object has no attribute 'namespaces'
#294
kevinkle
opened
6 years ago
0
MERGE: travis.ci back online
#293
kevinkle
closed
6 years ago
1
FIX: should check fasta not query_file; bug from f508c32
#292
kevinkle
closed
6 years ago
0
Merge: Display summary stats instead of specific files
#291
kevinkle
closed
6 years ago
0
FIX: race cond + default timeout
#290
kevinkle
closed
6 years ago
0
MERGE: have phylotyper retrieve seq directly from graphs
#289
kevinkle
closed
6 years ago
0
EDIT: delete compressed file after extraction
#288
kevinkle
closed
6 years ago
0
MERGE: fixes to time multiple files
#287
kevinkle
closed
6 years ago
0
FIX: Pipeline.refetch()
#286
kevinkle
closed
6 years ago
0
MERGE: bypasses jobs that are no longer found
#285
kevinkle
closed
6 years ago
0
MERGE: store the index ('cache') of spfyids:genomehashes in MongoDB
#284
kevinkle
closed
6 years ago
0
MERGE: timing of Pipelines + fix storage of file names
#283
kevinkle
closed
6 years ago
0
MERGE: new route for check for runtime of RQ jobs
#282
kevinkle
closed
6 years ago
0
check rq difference between "not found" and "error"
#281
kevinkle
closed
6 years ago
3
ADD: additional genomes
#280
kevinkle
closed
6 years ago
0
ADD: phylotyper definitions into ontology generation script
#279
kevinkle
closed
6 years ago
0
MERGE: Phylotyper backlog queue
#278
kevinkle
closed
6 years ago
0
IndexError: list index out of range
#277
kevinkle
opened
6 years ago
0
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