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Whenever there is a new release of https://github.com/pypsa/technology-data we should update the ariadne-data/costs/{mean,optimist,pessimist} files. Ideally that would happen automatically in the snak…
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### What would you like to be added?
An alternative to `Job.spec.suspend` that allows multiple controllers to cooperate towards starting a Job.
This is analogous to scheduling gates https://kubern…
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Hi, is it possible that the snakemake implementation supports single "tumour-only" samples? It looks as though it doesn't, or at least this usage is not described. I am making a snakemake workflow em…
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### 🛠 Proposed Refactor
GraphGym's implementation is unnecessarily complicated and poorly documented. I'd like to replace it with a [Snakemake](https://snakemake.readthedocs.io/en/stable/) workflow. …
Sann5 updated
10 months ago
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**Snakemake version**
8.14.0
**Describe the bug**
When a Snakemake module imports its Python module, a `ModuleNotFoundError` is raised. However, when the module is executed on its own, no such er…
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**Snakemake version**
8.4.7
**Describe the bug**
On Windows write_source_archive in workflow.py tries to write to C://Tempfile//Path/snakemake-sources.tar.xz rather than C:/Tempfile/Path/snakemak…
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**Snakemake version**
Both `7.12.0` and `7.6.1`
**Describe the bug**
The returned path from `workflow.source_path` changes cross different executions of snakemake, even though the file do…
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Hello,
I am encountering an error when I try to run this command:
`snakemake --use-conda --conda-frontend mamba --conda-create-envs-only --cores 10`.
The error says:
```
Traceback (most recen…
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Hey Quentin,
Thanks for te very nice tolls you developed.
I'm trying t run it on Merscope data using the Snakemake pipeline, using a custom .yaml file based on your baysor_vizgen.yaml one.
…
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Hey there,
I've been trying to use the snakemake workflow for sopa with baysor segmentation. I followed the installation steps specific to snakemake and verified the correct installation of sopa an…