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I'm getting the following error:
trackpy.linking.utils.SubnetOversizeException: Subnetwork contains 10316 points
All the images in my stack have ~ 10k points.
`f = tp.batch(frames[:], 5, minm…
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Hi,
I'm preparing a tutorial for my lab on trackpy and going though the walkthrough notebook, I noticed that the png images have 4 channels
```
from skimage.data import imread
imread('../sample_data…
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Hello devs, first of all I'd like to thank you for your work on this small but promising library. I'm currently wrapping parts of your library to use with a command line tool intended for particle tra…
lagru updated
6 years ago
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I am trying to identify features using tp.locate and annotate. The resultant data frame often contains rows with 0s in all columns for a given row.
Script: [cell_count.txt](https://github.com/soft-ma…
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Hi,
First, let me express my awe relative to the work you have done with Trackpy. This is really a great package, well integrated in the modern scientific Python ecosystem.
A while ago, during my ow…
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Hello, Everything was running ok with ubuntu 13.04. And then the runtrackpy library started to be messed up with tracking (I think when I updated to 13.10).
So I first identify all features with somet…
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I am using ImageIO to read .tif files that were converted from .czi using ImageJ.
When processing them through tp.batch, I get the following warning :
`C:\ProgramData\Anaconda3\envs\IIIVII\lib\site…
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Hi,
I'm curious if the maintainers would be amenable to a PR that allows for users to input a string that is passed to scikit-learn for `dist_func` in `trackpy.link` et al. Allowing a user-passed p…
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I saw in the source code the max_candidates limit is set as 9, and in my analysis, the code gave me an error message saying there are 10 forward candidates when it tries to link particles between fram…
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Hi There,
I have been trying to use trackpy for some time now and have run into an issue with ridiculously high RAM usage (like 10's of gigabytes) while trying to locate features/particles even in a s…