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Your package idea seems very good. Is it possible to apply it to multiple samples as well?
In my data, each sample has its own local x and y coordinates. And I have a merged object.
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Hi,
i am trying to run Cytospace on spatial transcriptomics on Count matrices encountering the **illegal hardware instruction**.
Iam running cytospace on Macos M3 Max Chip. highly appreciate any…
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We have at least one dataset coming in that uses ST. Should assess what metadata to collect and what file formats to require. There's both imaging and transcriptomics components, so this might require…
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Hello,
I have been unable to locate the high-resolution .TIF images for the four samples mentioned in your paper.
The images provided on the following website (https://www.ebi.ac.uk/biostudies/…
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Hello,
I am trying to run Trinity on my school's supercomputer and have gotten the following error messages after requesting an update to the 2.15.1 version. Does anyone have any insight into what …
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Hello,
I am using human lymph node data from 10x visium spatial transcriptomics data set. Also, I am little new to coding. I was trying to understand the package STdeconvolve using your youtube tut…
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This is a list of tutorials that are missing a workflow, if anybody would like to run this tutorial and extract the workflow from their history afterwards and upload it here, this would be a great hel…
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Recently ingested "HDCA project: single cell transcriptomics" has a wrong number of bundles because of incorrect linking (38 instead of 10). It did not trigger any analysis as is
10x 3' v3 sequenci…
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# SummarizedExperiment -> tidy() -> tidybulk! - Tidy transcriptomics
[https://stemangiola.github.io/tidytranscriptomics/post/2021-02-18-new-post/introduction/](https://stemangiola.github.io/tidytra…
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Hi, I am new to programming and this is my first time posting an error like this, so if there is anything I forgot to include or did wrong please let me know.
I am performing a Trinity run which h…