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I realized when designing the page that it would present more powerfully if we can start by showing only the root tree node and its 64 cells, then transition to showing the data it represents—by growi…
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Now that the columns in the results CSV are fixed (see https://github.com/lutteropp/NetRAX/issues/14), let's list which plots we need. Here are some that I believe make sense to have:
- Use the dat…
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Hello!
I'm giving phyloseq a try for the first time. I'm interested in the plot_tree function in particular.
I've imported my biom out table, rep seqs, and phylo tree that I generated with Qiime.
I'm…
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Phenomena like whole genome duplications are major factors for driving new speciation
…
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We screen these plots out and do not send them to OpCost. However, they are in the harvest_costs table for two reasons and thus are included in Optimizer analysis when they should not be.
1. We cre…
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ref https://github.com/dmlc/xgboost/issues/9810
Currently, attempting to plot trees that have categorical splits in R will result in an error:
```r
library(xgboost)
set.seed(123)
y
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## Use Case
We can plot a correlation matrix in the viewer and have it be clickable. Click could take you to a scatterplot with the two features on x and y axes.
## Acceptance Criteria
TBD w…
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Problem:
The documentation is lacking in respect for the log messages.
For example log in info level yields messages of the following kind:
```
{feature names} pr0 tb0 type0, border=6 score 65.480…
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Ideas based on the Mopo design discussions (and earlier: https://github.com/spine-tools/Spine-Toolbox/issues/1554):
- A view to data (tree, graph, pivot, plots) could be stored as JSON
- It could th…
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Being able to plot a single decision tree of the forest would be wonderful.