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```
(base) chooseel@chooseels-MacBook-Pro smartdenovo % ./smartdenovo.pl -c 1 /Users/chooseel/Desktop/20220401-08_phage_nanopore_sequencing/seqtk/phage_OxfordNanopore.fa > phage.mak
(base) chooseel@…
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# Bioconda
- [x] Create a `bcalm` recipe for Bioconda @natir
# Flowcraft
- [x] Create an `abyss` component @emreerhan https://github.com/assemblerflow/flowcraft/pull/146
- [x] Create a `bcal…
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Describe the bug
I am using getorganelle for obtaining a circular mitochondria and I am getting this message. The gfa is from a canu assembly. Could you help me please? What could be wrong in the gfa…
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Hello! First of all thanks for the tool :)
I have been trying to run:
`Ratatosk correct -v -c 60 -s fq_short.txt -l long_list.txt -o ratatosk1`
in a CPU with up to 3Tb available RAM. It has…
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Hello!
kallisto 0.51.0 uses only one thread instead of 14 assigned for it. Is it OK or not? CPU is Intel(R) Xeon(R) CPU E5-2697 v3 @ 2.60GHz, RAM 256 Gb. Fasta file is approximately 6.5 Gb size.
…
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FYI: estimated genome size is 2.2 Gb and coverage of illumina ~ 70X and PacBio coverage: ~14X
Getting memory allocation error below (using MaSuRCA v3.2.6) :
terminate called after throwing an…
nm100 updated
2 years ago
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Over yonder at https://github.com/dib-lab/portable-snakemake-workflows/, I am working on a snakemake workflow that runs sgc to build a catlas. I am receiving the following error. I have looked through…
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input sequence -- human transcriptome
```
curl -JLO https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_rna.fna.gz
```
command run:
…
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Hello,
I'm trying out DAMAPPER for mapping a set of unitigs to PacBio reads, and when parsing the results I notice that sometimes duplicate alignments to different parts of the same read are reporte…
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in #345 commit 122d034, I re-re-re discovered that our code currently requires (and enforces!) that cDBG contig IDs be ordinal, going from 0..N-1 with no gaps in the sequence. The current code base ac…