ruanjue smartdenovo issues

ruanjue / smartdenovo

Ultra-fast de novo assembler using long noisy reads

GNU General Public License v3.0

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issues

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cut_biedge_strgraph_core Undefined references

#61 zhizhi411 opened 4 months ago
1
The assembly of genome is less than expect

#60 ala98412 opened 12 months ago
0
smartdenovo make error

#59 Bearmax90 opened 1 year ago
5
make: *** [JBX.dmo.lay] Error 1

#58 zxgsy520 opened 1 year ago
1
make: *** [pwk_genome.mak:27: pwk_genome.dmo.cns] Error 137

#57 dzh0220 opened 1 year ago
4
The tool returned zero bytes of wtasm.dmo.cns.log, wtasm.dmo.cns, and wtasm.dmo.lay.utg

#56 ChooseelBunsuwansakul opened 2 years ago
1
Assembly summary

#55 LisSa13 opened 2 years ago
0
Slurm exit code 2

#54 dagi34 closed 2 years ago
3
Does smartdenovo apply to PacBio HiFi Reads?

#53 ZhangXuegrowup closed 2 years ago
2
Does it support multiple input files like input*.fa ?

#52 Ural-Yunusbaev opened 2 years ago
1
Resume

#51 ardy20 opened 3 years ago
1
.gfa file produced

#50 ardy20 opened 3 years ago
1
so looong!!

#49 julieaorjuela opened 3 years ago
1
how to adjusting parameters to improve the assembly result

#48 linshengnan2020 opened 3 years ago
3
Assembly versus genome size

#47 ChuShin closed 3 years ago
2
prefix.dmo.lay.utg and contig.fasta

#46 pengbo233 opened 4 years ago
5
aarch64 platform support

#45 darmac opened 4 years ago
0
Nanopore sequence commands

#44 bioramg closed 4 years ago
5
Does it support fa.gz as the input?

#43 X-WJ opened 4 years ago
4
Died at ./smartdenovo-master/smartdenovo.pl line 23.

#42 baizixiansheng opened 4 years ago
6
About meaning of -c parameter

#41 hungweichen0327 closed 4 years ago
2
why is wtgbo skipped when using dmo overlapper in smartdenovo.pl?

#40 zhangrengang closed 4 years ago
1
the output file is null

#39 wuxiaopei0509 closed 4 years ago
1
error while running smartdenovo

#38 tanu121093 closed 4 years ago
3
polishing Smartdenovo assembly

#37 biowackysci closed 4 years ago
1
Discrepancies genome size

#36 begsch closed 5 years ago
4
installation error

#35 madhubioinfo opened 5 years ago
7
Should nanopores reads be corrected by canu or other corrector before using smartdenovo

#34 ncgrjsmiao closed 5 years ago
1
How to run wtzmo parallelly

#33 Jolvii85 closed 5 years ago
3
failed to `make wtcorr `

#32 zhangrengang closed 5 years ago
1
dmo.lay.

#31 Lutri22 closed 5 years ago
1
It would be good to have an actual release of this.

#30 akesandgren closed 5 years ago
2
PacBio and Nanopore Hybrid Assembly

#29 biowackysci closed 5 years ago
0
wtpoa-cns bam correction stage segmentation fault

#28 yuwwu closed 5 years ago
1
separating similar chromosome parts in corrected read assemblies

#27 chklopp closed 5 years ago
1
How does a SMARTdenovo output file look like

#26 biowackysci closed 5 years ago
2
wtzmo中的参数

#25 AmicPair closed 5 years ago
1
chloroplast genome totally lost

#24 njaupan closed 5 years ago
2
SMARTdenovo failure

#23 gabster closed 5 years ago
8
Compiation failed on "undefined reference to `cut_biedge_strgraph2'"

#22 yoann-dufresne closed 5 years ago
6
Kmer selection

#21 njaupan closed 6 years ago
1
output fastq from wtcns

#20 njaupan closed 6 years ago
1
missing one entire chromosome in the final assembly

#19 yjx1217 closed 6 years ago
4
smartdenovo make error

#18 liguiyang410 closed 6 years ago
8
Compilation error

#17 yjx1217 closed 6 years ago
14
[SMDS849.dmo.ovl] Bus error (core dumped)

#16 HTaekOppa closed 5 years ago
18
Performance improvement

#15 tangerzhang closed 6 years ago
4
Final Assembly File (*.cns) is not generated

#14 VivekTodur closed 6 years ago
1
No .cns file

#13 HTaekOppa closed 6 years ago
1
Generate consensus fasta file with Smartdenovo

#12 a-velt closed 6 years ago
3