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**From Dave:**
Following up on our very brief conversation about eGFR in yesterday's call. We have no documentation on what was done previously, or why. But Sean found some code in the provider app …
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This follows #74 and #63.
I would like to filter on `AF_popmax` if it is present, and ignore it if it is missing:
```
./slivar expr \
--vcf $vcf --ped $ped \
--trio "${moi}:kid.alts == 2 && …
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Hi ksamuk,
I am using pixy to calculate the nucleotide diversity, but the results are very strange. Let me explain my procedure:
(1) First I used GATK 4 to get all sites (variants + inviriants)
(2)…
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Dear Dr. Maih,
I'm following TaoZha econometrica example and I have two questions about the estimate and filter functions. To give more context, I'm running line 55 of _examples\VariousModels\TaoZ…
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Based on some recent uses of the pipeline, it was necessary to have some strains from different lineages as well as an outgroup.
I was wondering whether we should add a database similar to `EXIT-RI…
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**Describe the bug**
The snappy step dependencies in cubi-tk/snappy/common do currently not fully match the state of snappy. This means that i.e. `cubi-tk snappy kickoff`will not start certain steps,…
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A few things having done some digging myself.
Port 6093 seems to have something to do with upgrading firmware, perhaps the reason it leaves offline mode is because it is preparing to receive an up…
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There are some improvements bug fixes we can make to the single cell visualization.
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**Is your feature request related to a problem? Please describe.**
Not sure if this is a relevant issue or not. But I thought I would bring it up as a discussion.
Context: In a GMS-BT meeting ca…
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### Description of the bug
Basically a similar error as one reported not too long ago on the GATK forums:
https://gatk.broadinstitute.org/hc/en-us/community/posts/4412714547611-FilterVariantTranches…