issues
search
brentp
/
slivar
genetic variant expressions, annotation, and filtering for great good.
MIT License
252
stars
23
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Is FMT/PL supported by slivar?
#173
weizhu365
closed
1 week ago
2
Inquiry for vcf file
#172
dbswls0322
closed
4 months ago
1
pslivar not working
#171
sitems
closed
4 months ago
1
limit to only autosomes
#170
prasundutta87
closed
5 months ago
3
Allelic balance on slivar output
#169
evgenii-s-martirosian
opened
5 months ago
0
splice_polypyrimidine_tract
#168
hadasvolk
opened
6 months ago
1
Solo analysis, phased data
#167
karoliinas
opened
7 months ago
2
error message
#166
monaallouba
opened
9 months ago
7
Trio exome data
#165
monaallouba
opened
9 months ago
0
Wildcards in group subsetting?
#164
phillip-richmond-umoja
opened
9 months ago
3
Feature Request: Diagnostics on Duktape Errors/Warnings
#163
wwgordon
opened
11 months ago
0
Hardware Requirement
#162
SplinterTao
opened
11 months ago
2
gnomAD v4
#161
equinne5
opened
11 months ago
8
Select inherited variants
#160
krukanna
opened
11 months ago
1
filtering on INFO field
#159
equinne5
closed
1 year ago
4
Filter on CSQ numeric, pass if missing value
#158
wwgordon
closed
11 months ago
9
"Unknown Impacts": splice_donor_5th_base, splice_donor_region, splice_polypyrimidine_tract
#157
wwgordon
closed
1 year ago
4
Quickstart should contain info on how to create a pedigree file and what tool is recommended for combining trio VCF into single file
#156
nurmians
closed
1 year ago
1
slivar tsv singleton
#155
equinne5
closed
1 year ago
1
hemizygous variants didn't get picked
#154
lindakjcao
opened
1 year ago
17
Filter on INFO.AF_popmax, pass if missing value
#153
wwgordon
closed
1 year ago
3
unknown phenotype
#152
axz91
opened
1 year ago
5
missing DNMs from Strelka call
#151
weizhu365
closed
1 year ago
6
function trio_denovo
#150
fromtotw
opened
1 year ago
1
gnotate in v0.2.8 can fail to annotate indels >1 bp
#149
seboyden
closed
1 year ago
3
Lower DP threshold for chrX variants in males
#148
williamrowell
closed
1 year ago
6
DP threshold for chrX for males
#147
williamrowell
closed
1 year ago
0
VEP annotations other than impact?
#146
karynne7
opened
2 years ago
13
slivar expr : unaffected patients not selected
#145
gael-millot
closed
2 years ago
8
gnotate: converting BED to VCF
#144
wwgordon
closed
11 months ago
2
compound heterozygote tooling
#143
brentp
opened
2 years ago
3
Issues with group-expr in Mutect2 VCF
#142
fridells51
opened
2 years ago
0
understanding slivar output
#141
prasundutta87
closed
2 years ago
5
argument parser doesn't handle `=` in --arg=value
#140
tedil
opened
2 years ago
5
Errors reported by slivar and no variants
#139
lindakjcao
closed
2 years ago
2
CompHet question
#138
lindakjcao
opened
2 years ago
4
group expression on customized FORMAT field is not working
#137
lindakjcao
closed
2 years ago
12
missing null frequency variants
#136
luceamso
closed
2 years ago
2
make-gnotate, gnomAD filter field.
#135
Elliott77
opened
2 years ago
9
query about PED and trio VCF
#134
prasundutta87
closed
2 years ago
2
CADD score filtering
#133
Elliott77
closed
2 years ago
2
Finding de novo/autosomal recessive structural variants using slivar
#132
prasundutta87
closed
2 years ago
3
Column labels in annotation files
#131
priyambial123
closed
2 years ago
6
SIGSEGV: Illegal storage access. (Attempt to read from nil?)
#130
zeliasoo
closed
2 years ago
3
Missing de novo variant
#129
krukanna
opened
2 years ago
2
how can I extract \xb3 in slivar?
#128
luceamso
closed
2 years ago
8
Slivar tsv functionality w/o family structure
#127
nbalanda23
opened
2 years ago
4
Using SLIVAR for filtering variants
#126
dr-ashu-geno
closed
2 years ago
1
extract shared variant
#125
luceamso
closed
2 years ago
6
trio and family expr results
#124
luceamso
opened
2 years ago
6
Next