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brentp
/
slivar
genetic variant expressions, annotation, and filtering for great good.
MIT License
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Make gnotate from ExAC downloaded from Gnomad
#122
Drdreammaerd
opened
2 years ago
13
Variant-Level labelling
#121
MattWellie
closed
2 years ago
1
Using Manual String Field as 'Gene' for comp-het
#120
MattWellie
closed
2 years ago
6
Unable to access split-vep annotation in INFO
#119
MattWellie
closed
2 years ago
3
Unknown Consequence Types
#118
MattWellie
opened
2 years ago
12
unknown attribute:AB error for octopus joint-called VCF
#117
mvelinder
closed
2 years ago
2
Error: unhandled exception: SyntaxError
#116
luceamso
closed
2 years ago
1
Error: unhandled exception: Not a zip archive
#115
Drdreammaerd
opened
2 years ago
4
question about the difference between comphet_side and slivar_comphet
#114
hust-yyan
closed
2 years ago
2
ddc output
#113
hust-yyan
opened
2 years ago
2
slivar tsv
#112
sprakashUTH
closed
2 years ago
3
Error: unhandled exception: comphet.nim(46, 12)
#111
Drdreammaerd
opened
2 years ago
19
Cis/trans compound het
#110
krukanna
opened
2 years ago
1
slivar tsv: change --csq output delimiter for csq columns
#109
zihhuafang
closed
2 years ago
2
Detection of compound het in trans
#108
krukanna
closed
2 years ago
11
Gnotation Files hg38
#107
jainy
closed
2 years ago
5
slivar tsv and VEP canonical
#106
Madelinehazel
closed
1 year ago
1
slivar TSV: extract ID field
#105
puva
closed
2 years ago
3
slivar tsv: extract QUAL and FORMAT fields
#104
Madelinehazel
closed
2 years ago
8
downloadable topmed dbsnp file for hg19
#103
raungar
closed
2 years ago
6
DeepTrio GVCF support/guidance using the standard rare disease approach
#102
mvelinder
closed
2 years ago
7
Error: unhandled exception: /home/brentp/src/slivar/src/slivar.nim(197, 16) `ovcf.write_variant(variant)` [AssertionDefect]
#101
raungar
closed
2 years ago
2
list of impactful vocab
#100
team-tomato-salad
closed
2 years ago
2
make-genotate genomes files
#99
skanwal
closed
2 years ago
2
Data driven cutoffs
#98
Madelinehazel
closed
2 years ago
5
Issue using adjusted impactful txt
#97
team-tomato-salad
closed
2 years ago
1
build command
#96
JakeHagen
closed
3 years ago
8
How to filter for VEP plug-in annotations in INFO field
#95
seboyden
closed
3 years ago
1
Issue using zip file with slivar docker
#94
srynobio
closed
2 years ago
17
filter for presence/absence of a flag tag in the INFO field
#93
edg1983
closed
3 years ago
3
Slivar for SVtyper vcf
#92
nroak
closed
3 years ago
3
Link for gene_description returns 404
#91
wdecoster
closed
3 years ago
1
```SIGSEGV: Illegal storage access. (Attempt to read from nil?)``` on make-gnotate
#90
seboyden
closed
3 years ago
2
expand slivar tsv to work with groups
#89
brentp
opened
3 years ago
4
Using groups with multiple samples results in error
#88
edg1983
closed
3 years ago
5
Errors with rare variant expression
#87
sprakashUTH
closed
3 years ago
21
gnotate inconsistent zip (on large files)
#86
fcliquet
opened
3 years ago
6
Errors reported by slivar and no variants
#85
sprakashUTH
closed
3 years ago
1
Merging vcfs to use with slivar
#84
sprakashUTH
closed
3 years ago
16
AD: int32 required to use this tool
#83
sprakashUTH
closed
3 years ago
1
group expr results
#82
snashraf
opened
3 years ago
2
[slivar] warning and confusing results
#81
lconde-ucl
closed
3 years ago
3
multiplex pedigrees
#80
atimms
closed
3 years ago
14
compound het variants on non trios
#79
atimms
closed
3 years ago
12
Empty genotype and depth values in slivar tsv
#78
amwenger
closed
3 years ago
3
make-gnotate problems
#77
mvelinder
opened
3 years ago
1
group alias description for multiple alleles
#76
vdejager
opened
3 years ago
8
Add slivar-functions.js to docker image
#75
srynobio
closed
3 years ago
1
How to handle with missing field?
#74
liserjrqlxue
closed
3 years ago
13
pslivar through bioconda
#73
williamrowell
closed
3 years ago
3
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