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brentp
/
slivar
genetic variant expressions, annotation, and filtering for great good.
MIT License
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Rare disease example link (not big issue), gnomad v3
#72
Phillip-a-richmond
closed
3 years ago
1
`SIGILL: Illegal operation` for `compound-hets` with phased input
#71
williamrowell
closed
3 years ago
1
Using slivar for structural variants
#70
Hywel-W
closed
3 years ago
4
make-gnotate dbSNP change `RS` from `Integer` to `Float`
#69
liserjrqlxue
opened
3 years ago
10
how does decompose and normalize affect gnotate
#68
liserjrqlxue
closed
3 years ago
3
Family Expression Errors
#67
Roj4ck
closed
3 years ago
4
Low complexity region bed file?
#66
jpdna
closed
4 years ago
1
`--expr` option for `make-gnotate`
#65
williamrowell
closed
4 years ago
2
Add "AC_male" (v2 and v3) and "controls_AC_male" (v2) to gnomAD gnotate files for chrX
#64
seboyden
closed
3 years ago
2
How to ignore missing field?
#63
weizhu365
closed
4 years ago
2
make-gnotate
#62
josephhalstead
closed
4 years ago
1
Suppress PED Samples Dump
#61
bioinformike
closed
4 years ago
2
Slivar rare disease best practices
#60
syouligan
opened
4 years ago
8
Removing gnomad AC0 flag variants
#59
syouligan
closed
4 years ago
4
Provide warning/notification if 0 is in affected_status column of ped
#58
mvelinder
opened
4 years ago
2
multiple SNP in non-coding regions
#57
stefanucci-luca
opened
4 years ago
1
slivar rare-disease
#56
brentp
opened
4 years ago
2
vcf.nim(911) error for some genotypes
#55
mark-welsh
closed
4 years ago
6
make-gnotate issue when specifying multiple vcf/bcfs
#54
cvlvxi
opened
4 years ago
2
Feature Request: Linkage analysis?
#53
nroak
opened
4 years ago
1
Updates ddc
#52
brwnj
closed
4 years ago
0
moves expression text and adds copy
#51
brwnj
closed
4 years ago
0
Update ddc
#50
brwnj
closed
4 years ago
0
Support for annotations in table format
#49
edg1983
closed
4 years ago
1
updates html, style, and js for ddc
#48
brwnj
closed
4 years ago
0
segregating compound het function
#47
mvelinder
opened
4 years ago
0
broken gnomad zip for for genomes.v3.hg38
#46
brentp
closed
4 years ago
0
gnomAD v3 hg38 file
#45
nroak
closed
4 years ago
2
make-gnotate
#44
jeffverboon
closed
4 years ago
9
SV filtering
#43
erampersaud
closed
4 years ago
8
gnomAD frequencies different from website
#42
mvelinder
closed
5 years ago
1
ENH: add support for annovar annotations
#41
nroak
opened
5 years ago
6
Update default-order.txt
#40
jxchong
closed
5 years ago
1
support for family expressions
#39
brentp
closed
4 years ago
40
Re: multi-generational pedigree
#38
asapb
closed
5 years ago
7
Comparing genotypes
#37
JakeHagen
closed
4 years ago
8
use RankSum's for filtering
#36
brentp
closed
4 years ago
6
Slivar for VCF Filtering
#35
nroak
closed
5 years ago
9
Tsv csq cols
#34
brentp
closed
5 years ago
0
slivar tsv: allow exporting CSQ fields
#33
brentp
closed
5 years ago
0
Compound het screening in samples without trio information
#32
syouligan
closed
5 years ago
6
Feature Request: Restrict Analysis to BED Regions/ Locations
#31
nroak
closed
5 years ago
3
Header in PED file
#30
adw222
closed
5 years ago
1
optimization: allow skipping variants where all samples are hom-ref or unknown
#29
brentp
closed
5 years ago
1
Add uniprot gene descriptions to tsv report
#28
mvelinder
closed
5 years ago
1
SIGSEGV: Illegal storage access. (Attempt to read from nil?)
#27
snashraf
closed
5 years ago
56
Duo-del wiki error- hg19, hg38 switch
#26
nroak
closed
5 years ago
1
duo-del finds inherited deletions too
#25
brentp
closed
5 years ago
7
fix filtering for --pass-only with no trio/group/sample exressions
#24
brentp
closed
5 years ago
1
better error message for missing/bad gnotate file
#23
brentp
closed
5 years ago
0
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