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**1. What were you trying to do?**
We want to find the snp and indels variation from the result vcf file BS_graph_call.vcf.
**2. What did you want to happen?**
We want to find the reason that w…
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Hi, Could you point me to the baseline code to extract "chain of bubbles" from assembly graph? Also, I am not sure about the complete algorithm to simplify graph to extract chain of bubbles, is it we …
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1. Clean the current implementation
2. Better algorithms for creating Junction Trees.
3. Incorporate the Factor Graph BP into the main algorithm.
Ref #1740
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I looked at the wiki but didn't understand it well.
Because it was different if the case is WGS from WIKI.
So please advise. I come up with the workflow as below for my aim at calling variant from…
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This issue is meant for a discussion on how to represent model variation.
When showing climate change projections, the ensemble mean isn't really enough. it's pretty important to show the variatio…
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### Describe the issue:
Thanks a lot for your work on this library.
I am trying to perform a logistic regression using ADVI implementation of PyMC on the MNIST digit dataset.
However, it fails be…
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**What is the feature or improvement you would like to see?**
The "DIMACS formats" are a family of easy-to-parse formats for input data to various combinatorial problems put forward in the DIMACS c…
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Idea:
* Parse templates into AMR Graphs
* Parse sentences from documents into AMR Graphs
* Search for similarities in the subgraphs
* If similarity between subgraph is above a certain threshold, w…
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```
We want print feature to be added to Vizigator.
The variation from hardcopy print is that optimal allocation of graph into
sheet is required to Vizigator's print feature. Because we want whole gra…
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Hi,
I am trying the graph_peak_caller in ATAC-seq mode as you suggested in #8 . I am following the pipeline in vg to construct the variation graph. I worked on the mouse genome, in which case 21 gra…