-
### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v1.6.1
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
nextflow r…
-
### Ask away!
Recently i have had some problems running the workflow. I had no problems running v1.5.2 of the workflow on this file, but other ubam files fails both v1.6.1 and v1.5.2.
![image](http…
-
Hi-
My VCF is like this
```
##fileformat=VCFv4.1
##source=VarScan2
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##FILTER=
##FILTER=
##FORMAT=
##FORMAT=
##FORMAT=
##FORMAT=
##FORMAT=
##…
-
### What happened?
I'm attempting to run the demo workflow as described here:
https://github.com/epi2me-labs/wf-human-variation/issues/2#issuecomment-1231760421
with the command:
```
!nextf…
-
### Subject of the issue
found non-ASCII code after verticalGridLinesVisible in XYPlot.java
### Your environment
* version of jvarkit
* version of java: openjdk-11.0.8_10
* the value of `${JAVA…
-
Substitution plots look like this:
![image](https://user-images.githubusercontent.com/4514104/179624432-220fe1cf-2743-4cd9-a6bf-9183604b45ba.png)
The full samples name is: `zr1394_18_s456_trimme…
kubu4 updated
2 years ago
-
### What happened?
I'm attempting to run the demo workflow as described here:
https://github.com/epi2me-labs/wf-human-variation/issues/2#issuecomment-1231760421
with the command:
```
!nex…
-
Hi @pwwang!
I'm trying to use vcfstats on a multiple sample vcf file in conda environment. But the command line return some errors that I could not solve.
I got `TypeError: getattr(): attribute n…
-
### What happened?
First of all, thanks for your hard work, I think epi2me-labs workflows are excellent, both of them help me a lot.
What confused me is that the Docker images link is missing, anoth…
jhxaz updated
2 years ago
-
### What happened?
Hi, this is my first time running an epi2me workflow. I can see how this will help me (if I can get it to work!)
I am working on a diploid organism, and I am trying to phase var…