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lindenb
/
jvarkit
Java utilities for Bioinformatics
https://jvarkit.readthedocs.io/
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The conda version doesn't have the package I need.
#256
zhujiahua700403
opened
5 days ago
1
no valid chromosome was found in ./D***_HiFi01_hifiasm.bp.p_ctg.fa
#255
jiangqiuqiuu
closed
4 weeks ago
4
[Feature Request] Change to REF using Biostar404363
#254
Shians
closed
1 month ago
4
Use gradle default dependency management and create shadow/fat jar by using existing tools
#253
circlesmiler
opened
2 months ago
2
msa2vcf can't use given Ref
#252
NailouZhang
closed
3 months ago
8
jvarkit docker container memory error
#251
molly-hetheringtonrauth
opened
4 months ago
3
build failed
#250
asaki1986
closed
5 months ago
0
[minicaller] alt alle frequency calculation
#249
tingchenlrx
opened
6 months ago
0
[minicaller] error message of too many open files
#248
tingchenlrx
closed
6 months ago
1
Some CLPs have not been folded into the monolithic JAR
#247
yfarjoun
closed
6 months ago
3
request for Biostar398854 - Not called SNPs in lowercase letter in output FASTA
#246
Zwiep2023
opened
7 months ago
0
blastn2snp compilation errors
#245
nkneuro
closed
8 months ago
2
Class file version mismatch error while running Jvarkit
#244
indianAppl
opened
9 months ago
1
unknown error in wgscoverageplotter
#243
dcopetti
closed
9 months ago
2
How to set bin size to plot in wgscoverageplotter command?
#242
tiramisutes
closed
10 months ago
1
[SEVERE][MsaToVcf]Duplicate allele added to VariantContext
#241
liaochen1988
closed
10 months ago
1
[SEVERE][VcfAncestralAllele]Cannot read non-existent file: ***HELP***
#240
Warrenkevin
closed
1 year ago
8
Task :vcf2bam FAILED
#239
liyaron
opened
1 year ago
16
Build error: failed to create jvarkit.jar object
#238
Gilquin
closed
1 year ago
5
[INFO][Launcher]biostar139647 Exited with failure (-1)
#237
tbazilegith
opened
1 year ago
1
JAVA_HOME not defined but it is
#236
ghost
opened
1 year ago
1
COnda request
#235
zoeward-nz
closed
1 year ago
3
No read groups in bam
#234
zoeward-nz
opened
1 year ago
1
BUG:[INFO][Launcher]sam2tsv Exited with failure (-1)
#233
WXY-Belief
closed
1 year ago
1
Bug in msa2vcf ?
#232
wwood
opened
1 year ago
4
Task 'sortsamrefname' not found in root project 'jvarkit'.
#231
Leo-ccc
closed
1 year ago
3
jvarkit as conda package
#230
ausserh
closed
1 year ago
11
Biostar139647 update
#229
blinard-BIOINFO
opened
1 year ago
0
Biostar139647 update to allow selection of a reference in the alignment and creation of insertion
#228
blinard-BIOINFO
closed
1 year ago
0
Biostar139647 : documentation issues
#227
blinard-BIOINFO
closed
1 year ago
2
Biostar404363 – unequal AF instead of ambiguity code
#226
JMIBarth
closed
1 year ago
6
Backlocate w/ E. coli genome
#225
ibrahimkurt
opened
1 year ago
3
questions about sam2tsv output file
#224
seven1112233
closed
1 year ago
4
bamrenamechr [SEVERE][ConvertBamChromosomes]Illegal state mapper==null or dict-out=null
#223
sagitaninta
closed
1 year ago
5
vcf2svg
#222
Shingzzz
opened
2 years ago
0
java.lang.StackOverflowError [Biostar175929]
#221
vkulaganathan
closed
2 years ago
2
build failed，are these packages core packages or important packages and will they affect other toolkits?
#220
Shingzzz
closed
2 years ago
2
indel calls with msa2vcf?
#219
chazgoo
closed
2 years ago
2
Task 'MapUniProtFeatures.main()' not found in root project 'jvarkit'.
#218
wunalahu2
opened
2 years ago
2
Is it possible to add the 'Gene' and peptide 'POSITION(S)' info corresponding to each genomic coordinate using MapUniProtFeatures
#217
wunalahu2
closed
2 years ago
5
./gradlew mapuniprot install error
#216
wunalahu2
closed
2 years ago
3
Task :vcffilterjdk FAILED
#215
DavideGue
closed
2 years ago
1
build failed and test failed
#214
Shingzzz
closed
2 years ago
0
Test AssertionError
#213
jamdodot
opened
2 years ago
2
Randomized runs of Biostar154220.html
#212
tuannguyen8390
opened
2 years ago
1
vcf2tab
#211
mushalallam
closed
2 years ago
2
removed zero space, closes #192
#210
ialbert
closed
2 years ago
0
strange biostar214299 results
#209
seven1112233
closed
2 years ago
2
Error while installing -- Running Javac
#208
Auradhir
closed
2 years ago
2
Request to add a 'plot largest n contigs' for WGSCoveragePlotter
#207
DeadlineWasYesterday
opened
2 years ago
1
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