-
Currently, WES supports standard keywords for `CWL` and `WDL` workflow languages. Can we add a new `workflow_type` keyword supporting Nextflow-based workflows, perhaps `NEXTFLOW`?
-
This new feature would allow the execution of workflows via [GA4GH Workflow Execution Service API](https://github.com/ga4gh/workflow-execution-service-schemas).
-
Dear author,
Thank you for your amazing work appearing in COLING 18.
I found you reported the WES in your paper. However, I couldn't find any corresponding metric computing script in your reposito…
-
**Is your feature request related to a problem? Please describe.**
This PR introduces a basic WES launch tab for workflows: https://github.com/dockstore/dockstore-ui2/pull/1478, but there are areas we…
-
## Problem
Using the same schemas or base schemas across APIs to support identical or similar use cases facilitates implementation and therefore has the potential to increase adoption.
However, …
-
### Description of the bug
Good evening,
I am experiencing problems with Sarek's pipeline. When I try to remove the adapters from my WES data, the dragmap tool runs into "Segmentation Fault".
Do y…
-
Thanks a lot for your hardworking on PING. I was trying to use my WES and WGS data to do KIR genotyping, but it returned with partial results. manualCopyNumberFrame.csv and finalAlleleCalls.csv are no…
-
Hi @gilesjohnr
After installing data.table from github master,
```r
data.table::update_dev_pkg()
```
And then running R CMD check on WES, I get the following new failure, (which is not present i…
-
## Description
Entering free text is generally inconvenient and error prone for users. For the "Workflow type" and "Workflow type version" fields in particular, at any time, only a subset of values i…
-
Hi, I was using the FuSeq_WES module to run the detection of fusion genes (in particular MYB-NFIB and MYBL1-NFIB) in our WES data. These fusion genes are the hallmark of that cancer type. I did not en…