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The MOFA2 module contains a python step and a R step, where information is transfer using a hd5 file.
When the python step are done, it will save the model into the hd5 file using its own function`…
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For gene ABCA7, with MAC =5, there are 3260 beta/se generated by SuSiE, 1588 nominal beta/se from tensorQTL. The overlap is 1559.
Among the 1559 sumstat, the correlation of beta, se, and z score…
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After implementing the zapped file system. While @Shrishtee was trying to rerun the command for #373 using -s build, half of the `out.md.bam` output from picard_qc was removed.
The number of files…
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I will add a short description of the H3K9AC for the time being to document the steps of each module.
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While installing nloptr using r version 4.1.3 (as dependency requirement for sesame is R>=4.10) and the newest biocmanager version, following error occurs:
```
/mnt/mfs/cluster/bin/R-4.1.3/etc/Mak…
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The rnaseqc_calling step is giving this error. The std.err files are attached below.. It does look like it ran successfully looking at the error files.
This is for batch 2 (252) samples out of whi…
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When shrishtee was running RNA_Calling module, at the step of Picard QC, the following error occurs:
```
INFO 2022-08-22 10:59:12 ProcessExecutor [1] "Checking if R is installed"
10:59:12.543 I…
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While running STAR_align on the fastq converted from 50 ROSMAP bam whose 21 and 22 Chr are extracted, the following error occurs:
```
EXITING because of FATAL ERROR in reads input: quality strin…
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According to the documentation at https://zhou-lab.github.io/sesame/v1.14/sesame.html
```
The openSesame(func=) argument specifies whether the output is a SigDF list or beta values. The following sh…
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## Issue description
The main issue is we didn't get any clustered introns from MWE using the leafCutter differential splicing steps although the code ran and generated correct formated output files.…