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I'm trying to get new terms to describe some of the data in the FaceBase resource (this project is funded by NIH/NIDCR, website at facebase.org).
1. Suggested term name: Chromatin modifier-associat…
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urgent due to writing paper.
Is there a missing relationship between these two terms?
GO:0031509 telomeric heterochromatin assembly
The assembly of chromatin into heterochromatin at the telome…
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How could you use alignment data (and `samtools`) as well as `bedtools` in your own project?
Provide a least two examples of what said code might look like.
sr320 updated
7 years ago
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> ExpressionSet has proven a cornerstone of microarray and bulk RNA-seq analysis methods in Bioconductor, but extensions to it are desirable to add capabilities for scRNA-seq analyses.
Bit too flower…
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What do you consider the five most relevant BedTools commands based on your research interest?
Please list them and indicate what each one does.
What are three common filetypes used with BedTool…
sr320 updated
7 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/andreaskapou/BPRMeth
Confirm the following by editing e…
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The width of the loops does not reflect the counts across all samples. Instead, it reflects the counts within the region for each sample. Need some way to pass the `max counts` between the different p…
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- In the grid page and experiments data table page
- The selected experiments must be removed by double click (not single)
- Do not forget to update the description
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When user visit the grid page, auto select the following epigenetic marks:
- H3K4me3
- H3K9me3
- H3K27me3
- H3K36me3
- H3K4me1
- H3K27ac
- Input
- Dna Methylation
- CTCF
- DNaseI
- RNA
- mRNA
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DeepBlue returns the names without normalization (it has this normalization internally)
Some cases, it can result on duplicate values, for example, there is "DNA Methylation" and "dna methylation"
F…