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Thank you for the great tool.
I have a problem when I run the ' > gt.calls sweep.stats_kidney
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**Description**
Hello @rpetit3 ,
We are currently using the `shigeifinder` wf in the bactopia tools, but it stucks for many hours. Please find the logs below.
> (base) gilmansiu3@gilmansiu3-Z49…
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Thank you for this excellent tool!
In trying the perturbation function, I see it’s restricted to only PCA genes. Is there a way to run a perturbation workflow on genes that aren’t part of the PCA g…
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Hello all!
I am trying to install and run lab2d and meltingpot on my laptop:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance an…
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Dear Morris lab and Dr. Kamimoto,
Thank you for making this wonderful tool. I have a question regarding In Silico TF perturbation analysis. When oracle estimates transition probability and calcul…
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Hi when I use Zebrafish data , runing dyn.tl.cell_velocities(adata, method='kmc'), I got this problem:ValueError: Input contains NaN, infinity or a value too large for dtype('float64').But when using …
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https://hibberdlab.com/transrate/installation.html
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Hi,
I'm having some issues running the IsobaricAnalyzer to analyze TMT11 data. In the code I only modify the correction_matrix and keep the other parameters at their defaults. But the result seems le…
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When running `sct_run_batch`, user points to a dataset. The log file indicates the dataset that was used, e.g.:
~~~
sct_run_batch arguments were:
batch_log: sct_run_batch_log.txt
config: /home/jco…
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Hi Vladim,
I read on the DIA-NN documentations that spectral libraries can be generated from input files (.mzML files in my case).
I tried the following command:
`/usr/diann/1.8/diann-1.8 \
--…