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This issue is a place for everyone working on fields to drop tips, tricks and bits of documentation that we can later incorporate into the official docs at https://tripaldoc.readthedocs.io/en/latest/.
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Hello Mr.
I ran ORA with Clusterprofiler and it's ok (I had 73 GO terms), but when I was trying to apply Simplify funtion, but it does give me results. Could you help me please to identify the mist…
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We need to be able to map PRO terms used by CL to something the rest of the world can use. I think that means uniprot. Xrefs to uniprot are rare:
https://api.triplydb.com/s/tuAThwx4i
We mostly…
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**GOMAP-singularity version**
v1.3.4
**GOMAP-singularity step questions is related to**
mixmeth?
**Question**
Hello,
we have run GOMAP-singularity on barley Morex genome and supposedly it ra…
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IGSF members are in a flat hierarchy:
....is\_a PR:000000001 \! protein
.....is\_a PR:000001089 \! immunoglobulin superfamily member 2 \*\*\*
.....is\_a PR:000001090 \! immunoglobulin superfamil…
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Dear team
I ran following command,
funannotate annotate -i ../10mAF_1/predict_results/ -o ../10mAF_fun/ --rename 10mAF_rename_ncbi.txt --annotations 10mAF_annotations.txt --eggnog 10mAF_eggnog.txt
…
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SO allows us to trace back from exons, introns etc to transcripts (via part_of) and from transcripts to genes (via member_of).
Admittedly member_of may be a confusing relationship here, but at leas…
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As discussed on https://trello.com/c/s0HD7Vi6/173-tagexport-py
Requirement is to be able to see the genes found in metadata across screens.
- need to be able to filter according to gene symbol
- rest…
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## Describe the issue
NC_000002.12:g.47480764delT
is annotated by VEP 106 as:
Molecular consequence = frameshift variant
while the protein is given as: NP_000242.1:p.Cys843ValfsTer49
E…
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E.g. https://monarchinitiative.org/gene/NCBIGene%3A2263, diseases tab
This is confusing for anyone coming to the system and confusing to me too.
First of all, the reference is the same for all assoc…