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If I run the script below, the auc that is returned is NaN. It's not the same problem as in issue https://github.com/OHDSI/CohortMethod/issues/24 because in this case getdrugfromindication() is actual…
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Before in the VOCABULARY table there used to be
``` txt
VOCABULARY_ID - VOCABULARY_NAME
0 - OMOP Vocabulary v4.5 20-Oct-2014
```
I do not believe this concept still exists in the VOCAB v5 version ho…
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How do we know which MESH terms are in the CDMV4 (CDM Vocabulary version 4) ?
(basic info on coverage within a terminology).
If we need a term added to CDMV (or a group of terms) - how OMOP terms are…
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I get this error
```
javax.servlet.ServletException: java.lang.RuntimeException: org.postgresql.util.PSQLException: ERROR: relation "concept" does not exist
Position: 83
org.glassfish.jersey.se…
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Currently, we have been using whatever mappings we can find from the evidence sources to RxNorm, MedDRA, SNOMED, and MeSH. We know that there's a problem with SNOMED and MEDDRA cuis where many SNOMED …
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In reviewing and trying to load "fake data" into the OMOP CDM v5 Data Model it has come to my attention that vocabulary_version column entries in two tables have differing lengths, which has a potenti…
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Making an issue to hold discussion of moving PEDSnet to OMOP Vocab 4.5 in order to support the transformation to PCORnet V1. According to a recent email chain, this is a larger change than I thought. …
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To support the transformation to the PCORnet model, we may need to update the standard concept ids (that we are recording in Observation table during the site ETL) for many concepts.
For example, w…
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Jeremy,
Would you please edit the script processEuSPCToAddRxNormAndMeSH.py in OHDSI-KB/EuSPC to do the following?:
- open the data in FinalRepository_DLP30Jun2012.csv
- add two columns next to 'SUB…
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All,
I'm currently working on a service layer written in node, using express to host, and the challenge we currently face is that the service we want to deploy should be able to be hosted as standal…