OHDSI KnowledgeBase issues

OHDSI / KnowledgeBase

Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.

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issues

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Examine Predication-based Semantic Indexing

#97 rkboyce opened 7 years ago
0
Analyze Pantelis "SCC" system for integration with LAERTES

#96 rkboyce opened 7 years ago
0
drugbank_xml_to_sql.py 'NoneType' has no attribute 'rstrip'

#95 svanschalkwyk opened 7 years ago
2
Potential bug in MEDLINE extraction code?

#94 schuemie closed 7 years ago
1
Bring in SIDER

#93 rkboyce opened 7 years ago
0
Enhancements

#92 ericaVoss closed 8 years ago
0
Future research: map to UMLS concept ids

#91 rkboyce opened 8 years ago
0
Defining Clinical Trial Data from Medline

#90 ericaVoss closed 8 years ago
1
Drop CDM only Tables

#89 ericaVoss closed 8 years ago
9
normalize FAERS counts using data in OHDSI on actual prescription rates

#88 rkboyce opened 8 years ago
0
Medline Record Drop - MeSH --> RxNorm

#87 ericaVoss opened 8 years ago
6
Additional Load Scripts Run for Build 3.01.20160412?

#86 ericaVoss closed 7 years ago
3
Large Drop in Medline Evidence

#85 ericaVoss opened 8 years ago
2
FAERS Using Deprecated Concepts

#84 ericaVoss opened 8 years ago
0
Document the valid values of the "supports" column for each data feed

#83 leeevans opened 8 years ago
2
Name all tables with laertes_ prefix

#82 rkboyce opened 8 years ago
1
Fixing EV_ table reference

#81 anthonysena closed 8 years ago
0
Change the supports column in drug_hoi_evidence from boolean to varchar in ohdsiTest3.psql

#80 rkboyce opened 8 years ago
1
SPL/Evidence Mis-Assigning

#79 ericaVoss opened 8 years ago
3
LAERTES Version

#78 ericaVoss closed 7 years ago
6
CTD might be a very interesting source and should be simple to load

#77 rkboyce closed 8 years ago
1
Add these tables to pull in CT. Gov data

#76 rkboyce opened 8 years ago
1
Test the concept similarity mappings and see if it is useful

#75 rkboyce opened 8 years ago
0
Test crosswalking MeSH drug class with semmed drug named entity mention to avoid false positives

#74 rkboyce closed 8 years ago
1
Duplication

#73 ericaVoss opened 9 years ago
3
Conditions and Drugs via Vocabulary

#72 ericaVoss opened 9 years ago
0
follow up on NLP of adverse events

#71 rkboyce opened 9 years ago
0
Distribution of LAERTES Method

#70 ericaVoss opened 9 years ago
1
Test the use of OntoADR to map MedDRA to SNOMED where relevant

#69 rkboyce opened 9 years ago
0
AERS CUI--> SNOMED Map

#68 ericaVoss opened 9 years ago
1
Indexes

#67 ericaVoss opened 9 years ago
0
Update the MEDLINE method to more recent best practice

#66 rkboyce opened 9 years ago
1
MI Missing From Universe

#65 ericaVoss closed 9 years ago
3
Make consistent the resource names from OHDSI

#64 rkboyce opened 9 years ago
0
Bad SemMed counts and linkouts - accidentally creating a partial crossproduct instead of a selective join

#63 rkboyce closed 8 years ago
1
[1000772-31967] Bad Link Out

#62 ericaVoss closed 8 years ago
2
Missing data in evidence sources and FAERS count were mis-assigned to the EB05 column in ohdsi schema

#61 rkboyce closed 9 years ago
0
Overall MEDLINE Count

#60 ericaVoss closed 8 years ago
2
Incorrect Evidence Link Out

#59 ericaVoss closed 8 years ago
5
Address null mappings for PV signals to rxnorm and snomed

#58 rkboyce closed 8 years ago
5
Check to see if Post Marketing and ADR are different SPL sections from SPLICER's perspective

#57 rkboyce closed 9 years ago
0
Fix SemMed Graph link out to use Modality Also

#56 ericaVoss closed 9 years ago
0
Splicer Results

#55 ericaVoss closed 9 years ago
2
Update the OMOP Reference Set

#54 ericaVoss closed 9 years ago
5
Need New Vocabualry

#53 ericaVoss closed 9 years ago
2
Port the EU SPC short URL mechanism to the new scalable method

#52 rkboyce closed 9 years ago
1
use the same 'poc' namespace for all drug and hoi resources in Open Annotation Data graphs

#51 rkboyce closed 9 years ago
0
Source-specific licensing

#50 rkboyce closed 9 years ago
2
Change to process for acquiring sparql tinyurls to be more scalable and efficient

#49 rkboyce closed 9 years ago
1
An update of the pharmacovigilance signals needed by 1/31/2014

#48 rkboyce closed 9 years ago
0