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Hi
Thanks a lot for developing this interesting tool! I'd like to start with apologising for the elaborate issue, but I have a few thoughts/questions (after going through the paper and some other i…
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Hello,
Thank you for developing this software - very easy to install and run.
I am using it to place contigs of a ~230 Mb plant assembly (28x HiFi data, assembled with hifiasm, I have mostly p-c…
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Hi Jens,
I ran the PC3_prostate WGS data provided in [NATURE paper](https://www.nature.com/articles/s41467-018-08200-y) with PrepareAA on GCRh38. The results can be downloaded from [here](https://g…
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Hi,
I found DADA2 would produce an abnormally high number of Q1 (frequency of uniques, i.e. species that occur in only one sample) when pooling more than ~40 replicates.
Here are the details:
I …
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Hi. This is more of a question and not an issue. I have two cases 1. I have two groups A and B and I have one alignment for them which I am using in FEL-contrast to choose A and B as foreground and ba…
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When I input the following code in terminal in mac:
kb count /Users/khush/index.idx_cdna,/Users/khush/index.idx_intron.0,/Users/khus/index.idx_intron.1,/Users/khush/index.idx_intron.2 -g /Users/kh…
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Hi,
I am dealing with MPRA data with `MPRAflow`, however, I am gonna process this kind of MPRA dataset ([https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE87711](https://www.ncbi.nlm.nih.gov/ge…
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In GitLab by @peterdesmet on Aug 7, 2020, 10:05
The package property [`event_interval`](https://gitlab.com/oscf/camtrap-package-schemas/-/blob/master/camtrap-package-profile.json#L164-167) is defined…
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We would like to compare the performance of running msprime with gene conversion with some specialised bacterial simulators. See the original thread for details:
_Originally posted by @fbaumdicker …
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Hi,
before primer removal I can find my primers like this:
```
Forward Complement Reverse RevComp
FWD.ForwardReads 88149 0 0 0
FWD.ReverseReads 9 …