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```
Design a diagnostic seq for bisulftite sequencing. Specific regions of the
sequence should meet strict criteria with regards to length, GC content and
base distribution. Charlie and Dan will hel…
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```
eom
```
Original issue reported on code.google.com by `natalia....@gmail.com` on 16 Dec 2013 at 11:45
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Display libraries' libtypes as
- merged
- bisulfite
- chipseq
- rnaseq
- genomic
- unaligned
```
Original issue reported on code.google.com by `natalia....@gmail.com` on 22 Apr 2013 at 11:26
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Does the new merging code take as input the *.realign.bam files or the original
raw BAM files. I saw some indel CIGAR strings in some of the new merges,
making me think it may be the realigned…
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```
There is at least one flow cell lane where it looks like the MethylSummary file
is there but some of the methylation fields are missing (see below)
Metric Name in Database Flowcell LIMS id C…
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```
the "Analysis Type" for MethylSeq-1 and MethylSeq-2 (FC: C235LACXX) is not set
in Genologics. As a result, both samples display "genomic" LibType in ECDP
instead of "bisulfite".
```
Original …
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Submitted reporting file. Included DNA Methylation status report for 27k and
450k. Check with Ben and Zack to determine if Bisulfite Seq needs to be
included for next submission.
```
Original i…
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A student (Nicola Hawes) and advisor want to chat on epigenetics next week
> I am currently doing my PhD research on the effects of environmental change on DNA methylation in a marine invertebrate (a…
sr320 updated
8 years ago
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I'm not sure if it's a problem any more with all pipeline runs by charlie, but
at least for merges I don't have access to see the .e and .o output files:
[bberman@hpc-laird:~/TCGA-gs1/analysis]…
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```
My understanding from Yaping was that we can run NOMe-seq as a workflow (it's
currently the same as bisulfite-seq but with a different parameter to generate
the GCH output files.
If this is ava…