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For `piker`, python is glue and a great interactive lang for getting things done in a readable maintainable way. Using it does not preclude using faster (compiled) langs for processing.
There's the…
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Currently curation PRs are not being checked in terms of their potential to break Snakemake workflow execution. It would be good if the Snakemake workflow can be run through GitHub actions to ensure t…
pcm32 updated
2 years ago
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I've written a Codon script that includes a class and a function to be exported:
```python
class Foo:
def __init__(self):
print('ctor')
def __del__(self):
pri…
gyuro updated
10 hours ago
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Hello,
Thank you first for your interesting work.
I'm trying to apply your method to some analyses over corals.
OMA only contain few distant species of cnidarians, so I followed the steps in …
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I make a test data. list :
The gff3 file(test.gff) :
Fvb1 GeneMark.hmm3.161109 gene 1 1906 . + . ID=gene31665;Name=gene31665
Fvb1 GeneMark.hmm3.161109 mR…
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I annotated a version of Brucella BO2 in RASTtk in PATRIC and it called a very strange gene. Starting sequence is G. This shouldn't be happening
![screen shot 2015-08-05 at 12 25 47 pm](https://clou…
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Hi Brian,
There seems to be a bug in how EVM calculates phase for the gff3 output. Here's the problem - one of our users has submitted genome annotations predicted by EVM to us, including both a gf…
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Problem: Streaming variants without a specific order imposes large requirements
on server side annotations.
Consider an example of performing haplotype annotations in which we have two
adjacent SNP…
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Hi @hoelzer,
First, thank you for designing this nice tool.
I want to use poseidon in a set of mitochondrial genes, but, apparently, poseidon only uses the Standard Code.
Is there an option to de…