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Hello,
I used the STAR-Fusion v1.9.0 to built my genome lib with prep_genome_lib.pl, but no matter what version genome I used, all of them reported the following errors:
**died with ret 9 No such…
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Hi,
I am comparing two genomes with a reference genome but BRIG generates alignment with only one genome, it is not showing another genome in the ring.
Please help me to solve the problem.
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Hi , maf2synteny is a one or multi-reference assisted tool and l noticed that the first sequence always be the backbone in the genomes_permutations.txt file. l wanna ask if there are some parmeters ca…
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Dear Team:
Thanks for sharing the SV pipeline. Now, we have 30X whole genome sequencing. We would like to know the coverage of your whole genome sequencing. Can we apply this SV pipeline to our…
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What is the runtime for panaroo for approximately 15000 genomes. Is it standardized for that volume of data. In my case I am usign 40 threads and more then 300 hrs. have passed it's sill running. Any …
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While running code "run_cicero", I keep getting "The previous R session was abnormally terminated due to an unexpected crash"
I don't know what to do,I also test the other data, meet the same issue…
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We want to choose, e.g. pathogen vs non-pathogen genomes.
- how many?
- which organisms?
- are we really discriminting pathogens or fakey "pathogens" on the basis of MLST?
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something, MUMmer, bedtools, primer design
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HI Arang,
One question I have is that I used hifi data on well assembled T2T genomes to predict QV and found in QV between 53-56(Completeness:93). And I found other genomes that are not T2T, some p…
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Hi there, just wanted to let you know what when trying to run sigprofilerextractorR using cosmic v2, the reference file is not found:
/opt/anaconda3/lib/python3.8/site-packages/SigProfilerAssignment…