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Expected Behavior
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Requested trial types:
Stage 1
Stage 2
Stage 3
Stage 4
First Clonal
Second Clonal
For Bugs:
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I am wondering if there is any prospect of using the quantitatively more accurate sex-specific recombination maps (e.g., those from deCode) in a fork of whatshap or a future version.
Cursory examin…
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Curated by @jingluodatacurator
https://canto.phi-base.org/curs/fa6dafc2380a5876
Notes:
Uniprot IDs: G4XX47, G4XX53, G8EI90
~Strains~ Genes/proteins: SdhB, SdhC, SdhD (see Table 3 and Table 4)…
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I received an unexpected error in version 2.2: ERROR: all individuals have missing/invalid values for phenotype 'X30620'.
it is a quantitative traits and 1000+ values for this trait. It should no…
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For studies with genotyping technology as 'Exome genotyping array' in the curation template, the yaml file shows 'Exome-wide sequencing'
eg:
1. Submission id: https://www.ebi.ac.uk/gwas/deposition/su…
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Hi,
Please may I check if REGENIE step 1 requires independent SNPs (does the genotype data need to be pruned during cleaning prior to running step 1)?
Thank you in advance!
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Dear developer
We want to only make use of pangenie for group typing from the result of Minigraph-cactus.
How do we delete snp and indel, because we feel that adding a large amount of snp and ind…
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Hi there,
We've been running SuSiE to derive credible sets for many different loci, and the results so far have made a lot of sense. However, other loci are proving to be more difficult. In these c…
aob93 updated
2 months ago
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I'm opening this up as an issue so that we can look back on results without having to hunt though emails. I will post some results from 1000G below. I think it is nice to be able to look at this using…
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