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gcfntnu
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gcf-workflows
Workflows at Genomics Core Facility Trondheim
BSD 2-Clause "Simplified" License
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update split pipe
#162
gsmashd
closed
4 months ago
0
Parse: well mapping for samples
#161
gsmashd
closed
4 months ago
0
sample list with well mapping in parse rules
#160
gsmashd
closed
4 months ago
0
Add validrops as automatic single cell filtering
#159
flatberg
opened
4 months ago
0
Split pipe samples
#158
gsmashd
closed
4 months ago
0
Update main
#157
gsmashd
closed
5 months ago
0
155 singlecell default parse output
#156
gsmashd
closed
5 months ago
0
singlecell: default parse output
#155
gsmashd
closed
5 months ago
0
arg barcode rename for cellranger aggr
#154
gsmashd
closed
7 months ago
0
Update main
#153
gsmashd
closed
7 months ago
0
151 metagenome add tree structure to phyloseq object
#152
gsmashd
closed
7 months ago
0
metagenome: add tree structure to phyloseq object
#151
gsmashd
closed
7 months ago
0
Metgagenome: handle all unclassified in bracken
#150
gsmashd
closed
7 months ago
0
metagenome: handle unclassified in bracken
#149
gsmashd
closed
7 months ago
0
147 region summary for 16s in metagenome
#148
gsmashd
closed
7 months ago
0
region summary for 16s in metagenome
#147
gsmashd
closed
7 months ago
0
144 expand metagenome pipeline for 16s
#146
gsmashd
closed
7 months ago
0
convert_scanpy rewrite wit addition of sample_info, feature_info and …
#145
flatberg
closed
6 months ago
0
Expand metagenome pipeline for 16S
#144
gsmashd
closed
7 months ago
1
update singlecell featureinfo and use in convert_scanpy
#143
flatberg
closed
6 months ago
0
130 alternative update snakemake to 8
#142
gsmashd
closed
8 months ago
0
135 rnaseq pileup of common variants
#141
flatberg
closed
8 months ago
0
use proper config url of winecellar
#140
flatberg
closed
8 months ago
0
unify winecellar url
#139
flatberg
closed
8 months ago
0
Revert "135 rnaseq pileup of common variants"
#138
gsmashd
closed
8 months ago
1
135 rnaseq pileup of common variants
#137
flatberg
closed
8 months ago
0
No peppy
#136
flatberg
closed
8 months ago
0
rnaseq: pileup of common variants
#135
flatberg
closed
8 months ago
0
nbconvert alternatives
#134
flatberg
opened
8 months ago
0
Add new transcript focused expression in RNA-seq
#133
flatberg
opened
8 months ago
0
Suppoort for the the new config sheet in sample submission form
#132
flatberg
opened
8 months ago
0
Add automatic cell type annotations to singlecell workflow
#131
flatberg
opened
8 months ago
0
Update snakemake to 8
#130
gsmashd
closed
8 months ago
1
merge doublet detection and fix typo in singlecell bfq level 2 symling
#129
gsmashd
closed
8 months ago
0
scrnaseq demultiplexing and doublet detection by natural variation/genotyping
#128
flatberg
closed
8 months ago
1
external doublet detection by majorty vote aggregation
#127
flatberg
closed
9 months ago
0
external doublet detection in scrna
#126
flatberg
closed
9 months ago
0
remove star spliced sections and columns from multiqc report and set …
#125
gsmashd
closed
9 months ago
0
update main
#124
gsmashd
closed
9 months ago
0
119 kraken2 in common qc
#123
gsmashd
closed
9 months ago
0
Clean up configuration
#122
flatberg
opened
10 months ago
0
add small-rna spike-ins from qiagen
#121
flatberg
opened
10 months ago
0
smallrna qiagen spike-ins
#120
flatberg
opened
10 months ago
0
kraken2 in common QC
#119
gsmashd
closed
9 months ago
0
update multiqc docker image
#118
gsmashd
closed
10 months ago
0
Update single cell preprocessing notebook to current best practices
#117
flatberg
opened
10 months ago
0
update main
#116
gsmashd
closed
10 months ago
0
Single-Cell genotype free sample demultiplexing
#115
flatberg
closed
8 months ago
1
Update main
#114
gsmashd
closed
11 months ago
0
update cellranger 7.1.0 -> 7.2.0
#113
gsmashd
closed
11 months ago
0
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