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Hi,
I am toying with fpa to see if it could improve my assemblies. However I observe a very strange behaviour, which I cannot explain:
I produced an all-vs-all alignment of my reads with minimap, …
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Hello! I have read through the notebooks on the website and I still had some questions about the theory mainly about the concepts.
The notes I wanted to quote are:
"We can see that:
from cell spe…
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**Is your feature request related to a problem? Please describe.**
SpliceAI is an in silico score that denotes variants that may impact splicing. It's different than the other scores which we largely…
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Dear Vadim,
I am repeatedly experiencing with multiple versions of DIA-NN in processing direct-DIA searches for both dia-PASEF and DIA from Orbitrap platforms. The search usually takes 10 to 12 day…
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# Feature request
Hi there,
I´m enjoying using eLABFTW, especially the viewer for Plasmids is a very nice issue.
It is really useful to look into the digest of the plasmid that you are currently …
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Hi,
I am trying to analyse my mass spec data using 2 search engines - tide and X!tandem. I am running X!Tandem via SearchGUI whereas for tide I am running it via the MS toolkit crux. `crux tide` ge…
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Hello,
What tool shall I use to generate pictures like FIGURE 8 in the paper ?
Thanks!
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Hello,
I'm working with NextSeq 16S data from stool samples. I would like to track sequences from one group of samples through other samples (donor to recipient), so it is important to recover as m…
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Hi,
Thanks for your useful package!
I finished funning `infercnv::run`, and got the result file 'infercnv.observations.txt'. However, I am confused about how to interpret it. Could you please gi…
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Hi Vladim,
Thanks for developing this software and for its detailed documentation! I have succesfully used DIA-NN to run some quantifications. However, I have the following question:
I wanted t…